Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACMGGS_RS15395 Genome accession   NZ_CP179893
Coordinates   3225168..3225782 (+) Length   204 a.a.
NCBI ID   WP_414163345.1    Uniprot ID   -
Organism   Superficieibacter sp. BNK-5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3220168..3230782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGGS_RS15375 (ACMGGS_15375) - 3220571..3222331 (-) 1761 WP_414163343.1 AAA family ATPase -
  ACMGGS_RS15380 (ACMGGS_15380) matP 3222514..3222966 (+) 453 WP_414163344.1 macrodomain Ter protein MatP -
  ACMGGS_RS15385 (ACMGGS_15385) ompA 3223030..3224088 (-) 1059 WP_276164522.1 porin OmpA -
  ACMGGS_RS15390 (ACMGGS_15390) sulA 3224441..3224950 (-) 510 WP_414166287.1 SOS-induced cell division inhibitor SulA -
  ACMGGS_RS15395 (ACMGGS_15395) sxy/tfoX 3225168..3225782 (+) 615 WP_414163345.1 TfoX/Sxy family DNA transformation protein Regulator
  ACMGGS_RS15400 (ACMGGS_15400) - 3225861..3226703 (-) 843 WP_414166288.1 PTS transporter subunit EIIC -
  ACMGGS_RS15405 (ACMGGS_15405) - 3226728..3226898 (-) 171 WP_414163346.1 hypothetical protein -
  ACMGGS_RS15410 (ACMGGS_15410) yccS 3227223..3229358 (-) 2136 WP_414163347.1 YccS family putative transporter -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23553.23 Da        Isoelectric Point: 9.5806

>NTDB_id=1093442 ACMGGS_RS15395 WP_414163345.1 3225168..3225782(+) (sxy/tfoX) [Superficieibacter sp. BNK-5]
MSNISYKRIYQSQEYLSPLGTVRYRALFGGYSLAIDNTVFAMVAEGDLYLRVCEQSAPYRVNHPTSLLTLQKRGRPILLN
YYRVDDALWGDRQTLLHLSSFSLQAAQQEKVRRGGVKRLKDLPNITFHLEMLLMEVGIRTEEDLRALGAELAWLKIREKK
KYLSVRLLYALEGAIAGMHEAMLTVQRRQQLTDWFNTLPELSND

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1093442 ACMGGS_RS15395 WP_414163345.1 3225168..3225782(+) (sxy/tfoX) [Superficieibacter sp. BNK-5]
ATGAGCAATATCTCATACAAACGGATTTATCAGTCGCAAGAATATCTTTCGCCGCTGGGAACCGTCCGCTATCGGGCGCT
GTTTGGCGGATATAGTCTGGCGATAGATAACACGGTCTTTGCGATGGTGGCTGAAGGGGATTTGTATCTGCGAGTTTGCG
AGCAAAGTGCACCTTATCGGGTCAATCATCCCACCTCGTTACTCACGCTGCAGAAAAGGGGGCGTCCGATCTTGCTGAAT
TATTATCGGGTTGATGATGCGCTCTGGGGCGACCGTCAAACGCTTCTGCACCTAAGTTCATTCTCACTTCAGGCCGCGCA
ACAGGAAAAAGTTCGCCGTGGTGGCGTCAAAAGATTGAAGGACCTGCCGAATATTACCTTTCATCTCGAAATGCTGCTAA
TGGAGGTGGGGATCCGTACCGAGGAAGACCTGCGCGCGCTGGGCGCAGAACTGGCGTGGTTAAAGATAAGGGAAAAGAAA
AAGTATCTGTCAGTAAGACTCCTTTATGCGCTAGAAGGCGCTATTGCCGGTATGCACGAAGCCATGCTTACCGTACAACG
GCGTCAACAGCTGACGGACTGGTTTAATACGTTGCCAGAACTCAGCAATGATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

55.556

97.059

0.539

Multiple sequence alignment