Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ACK8DD_RS10010 | Genome accession | NZ_CP179880 |
| Coordinates | 2117976..2118356 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain MRSN548254 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2112976..2123356
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACK8DD_RS09980 (ACK8DD_09980) | tadA | 2113095..2113598 (-) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
| ACK8DD_RS09985 (ACK8DD_09985) | - | 2113605..2114729 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ACK8DD_RS09990 (ACK8DD_09990) | ung | 2114726..2115439 (-) | 714 | WP_001177527.1 | uracil-DNA glycosylase | - |
| ACK8DD_RS09995 (ACK8DD_09995) | - | 2115490..2116086 (-) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| ACK8DD_RS10000 (ACK8DD_10000) | gspK | 2116316..2117275 (-) | 960 | WP_004747379.1 | type II secretion system minor pseudopilin GspK | - |
| ACK8DD_RS10005 (ACK8DD_10005) | xcpW | 2117275..2117976 (-) | 702 | WP_004747380.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ACK8DD_RS10010 (ACK8DD_10010) | xcpV | 2117976..2118356 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ACK8DD_RS10015 (ACK8DD_10015) | - | 2118346..2118900 (-) | 555 | WP_000841371.1 | type II secretion system protein | - |
| ACK8DD_RS10020 (ACK8DD_10020) | - | 2118910..2119518 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ACK8DD_RS10025 (ACK8DD_10025) | - | 2119556..2120329 (-) | 774 | WP_000497302.1 | TatD family hydrolase | - |
| ACK8DD_RS10030 (ACK8DD_10030) | - | 2120347..2120688 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ACK8DD_RS10035 (ACK8DD_10035) | - | 2120700..2121680 (-) | 981 | WP_004747384.1 | DNA polymerase III, delta' subunit | - |
| ACK8DD_RS10040 (ACK8DD_10040) | kdsB | 2121692..2122453 (-) | 762 | WP_000680696.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1093351 ACK8DD_RS10010 WP_000836911.1 2117976..2118356(-) (xcpV) [Acinetobacter baumannii strain MRSN548254]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1093351 ACK8DD_RS10010 WP_000836911.1 2117976..2118356(-) (xcpV) [Acinetobacter baumannii strain MRSN548254]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |