Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ACK8DE_RS09015 | Genome accession | NZ_CP179872 |
| Coordinates | 1873252..1873632 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain MRSN15116 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1868252..1878632
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACK8DE_RS08985 (ACK8DE_08985) | kdsB | 1869155..1869916 (+) | 762 | WP_000680696.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ACK8DE_RS08990 (ACK8DE_08990) | - | 1869928..1870908 (+) | 981 | WP_004747384.1 | DNA polymerase III, delta' subunit | - |
| ACK8DE_RS08995 (ACK8DE_08995) | - | 1870920..1871261 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ACK8DE_RS09000 (ACK8DE_09000) | - | 1871279..1872052 (+) | 774 | WP_000497302.1 | TatD family hydrolase | - |
| ACK8DE_RS09005 (ACK8DE_09005) | - | 1872090..1872698 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ACK8DE_RS09010 (ACK8DE_09010) | - | 1872708..1873262 (+) | 555 | WP_000841371.1 | type II secretion system protein | - |
| ACK8DE_RS09015 (ACK8DE_09015) | xcpV | 1873252..1873632 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ACK8DE_RS09020 (ACK8DE_09020) | xcpW | 1873632..1874333 (+) | 702 | WP_004747380.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ACK8DE_RS09025 (ACK8DE_09025) | gspK | 1874333..1875292 (+) | 960 | WP_004747379.1 | type II secretion system minor pseudopilin GspK | - |
| ACK8DE_RS09030 (ACK8DE_09030) | - | 1875522..1876118 (+) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| ACK8DE_RS09035 (ACK8DE_09035) | ung | 1876169..1876882 (+) | 714 | WP_001177527.1 | uracil-DNA glycosylase | - |
| ACK8DE_RS09040 (ACK8DE_09040) | - | 1876879..1878003 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ACK8DE_RS09045 (ACK8DE_09045) | tadA | 1878010..1878513 (+) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1093257 ACK8DE_RS09015 WP_000836911.1 1873252..1873632(+) (xcpV) [Acinetobacter baumannii strain MRSN15116]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1093257 ACK8DE_RS09015 WP_000836911.1 1873252..1873632(+) (xcpV) [Acinetobacter baumannii strain MRSN15116]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCAGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |