Detailed information NTG1093241

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACK8DE_RS02040
• Genome accession: NZ_CP179872
• Coordinates: 395150..396010 (-)
• Length: 286 a.a.
• NCBI ID: WP_004748468.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain MRSN15116
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 390150..401010

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK8DE_RS02015 (ACK8DE_02015)	-	391041..392351 (+)	1311	WP_004748473.1	tetratricopeptide repeat protein	-
ACK8DE_RS02020 (ACK8DE_02020)	-	392428..392754 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
ACK8DE_RS02025 (ACK8DE_02025)	rlmB	392856..393605 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ACK8DE_RS02030 (ACK8DE_02030)	-	393641..394555 (+)	915	WP_000075015.1	DMT family transporter	-
ACK8DE_RS02035 (ACK8DE_02035)	coaE	394552..395148 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
ACK8DE_RS02040 (ACK8DE_02040)	pilD	395150..396010 (-)	861	WP_004748468.1	prepilin peptidase	Machinery gene
ACK8DE_RS02045 (ACK8DE_02045)	pilC	396010..397236 (-)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
ACK8DE_RS02050 (ACK8DE_02050)	pilB	397266..398978 (-)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACK8DE_RS02055 (ACK8DE_02055)	tpiA	399269..400063 (+)	795	WP_000016932.1	triose-phosphate isomerase	-
ACK8DE_RS02060 (ACK8DE_02060)	secG	400076..400405 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32029.40 Da
• Isoelectric Point: 6.6664

>NTDB_id=1093241 ACK8DE_RS02040 WP_004748468.1 395150..396010(-) (pilD) [Acinetobacter baumannii strain MRSN15116]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IPWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1093241 ACK8DE_RS02040 WP_004748468.1 395150..396010(-) (pilD) [Acinetobacter baumannii strain MRSN15116]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCAATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCCTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGACCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	52.941	95.105	0.503
pilD	Vibrio campbellii strain DS40M4	51.661	94.755	0.49
pilD	Neisseria gonorrhoeae MS11	46.97	92.308	0.434