Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACK25W_RS10965 Genome accession   NZ_CP179722
Coordinates   2169094..2169429 (+) Length   111 a.a.
NCBI ID   WP_095285385.1    Uniprot ID   -
Organism   Bacillus pumilus strain FJAT-56819     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2164094..2174429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK25W_RS10945 (ACK25W_10945) gcvT 2164572..2165669 (-) 1098 WP_106031002.1 glycine cleavage system aminomethyltransferase GcvT -
  ACK25W_RS10950 (ACK25W_10950) - 2166231..2167901 (+) 1671 WP_060596833.1 DEAD/DEAH box helicase -
  ACK25W_RS10955 (ACK25W_10955) - 2167916..2168713 (+) 798 WP_034661279.1 YqhG family protein -
  ACK25W_RS10960 (ACK25W_10960) - 2168896..2169060 (+) 165 WP_106031001.1 anti-repressor SinI family protein -
  ACK25W_RS10965 (ACK25W_10965) sinR 2169094..2169429 (+) 336 WP_095285385.1 transcriptional regulator SinR Regulator
  ACK25W_RS10970 (ACK25W_10970) tasA 2169497..2170297 (-) 801 WP_106071628.1 biofilm matrix protein TasA -
  ACK25W_RS10975 (ACK25W_10975) sipW 2170355..2170927 (-) 573 WP_066031752.1 signal peptidase I SipW -
  ACK25W_RS10980 (ACK25W_10980) tapA 2170979..2171506 (-) 528 WP_414051597.1 amyloid fiber anchoring/assembly protein TapA -
  ACK25W_RS10985 (ACK25W_10985) - 2171806..2172084 (+) 279 WP_223250494.1 DUF3889 domain-containing protein -
  ACK25W_RS10990 (ACK25W_10990) - 2172118..2172312 (-) 195 WP_024718846.1 YqzE family protein -
  ACK25W_RS10995 (ACK25W_10995) - 2172371..2172754 (-) 384 WP_034661288.1 competence type IV pilus minor pilin ComGG -
  ACK25W_RS11000 (ACK25W_11000) comGF 2172751..2173251 (-) 501 WP_034661289.1 competence type IV pilus minor pilin ComGF -
  ACK25W_RS11005 (ACK25W_11005) comGE 2173190..2173507 (-) 318 WP_034661291.1 competence type IV pilus minor pilin ComGE -
  ACK25W_RS11010 (ACK25W_11010) comGD 2173491..2173937 (-) 447 WP_066030666.1 competence type IV pilus minor pilin ComGD -
  ACK25W_RS11015 (ACK25W_11015) comGC 2173930..2174223 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12959.51 Da        Isoelectric Point: 4.9956

>NTDB_id=1092856 ACK25W_RS10965 WP_095285385.1 2169094..2169429(+) (sinR) [Bacillus pumilus strain FJAT-56819]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKNQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1092856 ACK25W_RS10965 WP_095285385.1 2169094..2169429(+) (sinR) [Bacillus pumilus strain FJAT-56819]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
TCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

93.694

100

0.937

Multiple sequence alignment