Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ACMFG3_RS17950 Genome accession   NZ_CP179709
Coordinates   3730460..3731200 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain PR1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3725460..3736200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMFG3_RS17930 (ACMFG3_17930) aroB 3725997..3727079 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  ACMFG3_RS17935 (ACMFG3_17935) aroK 3727108..3727677 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ACMFG3_RS17940 (ACMFG3_17940) pilQ 3727689..3729854 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ACMFG3_RS17945 (ACMFG3_17945) pilP 3729922..3730449 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ACMFG3_RS17950 (ACMFG3_17950) pilO 3730460..3731200 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACMFG3_RS17955 (ACMFG3_17955) pilN 3731197..3731838 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  ACMFG3_RS17960 (ACMFG3_17960) pilM 3731838..3732896 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ACMFG3_RS17965 (ACMFG3_17965) ponA 3733059..3735614 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=1092798 ACMFG3_RS17950 WP_000076101.1 3730460..3731200(-) (pilO) [Acinetobacter baumannii strain PR1]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=1092798 ACMFG3_RS17950 WP_000076101.1 3730460..3731200(-) (pilO) [Acinetobacter baumannii strain PR1]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment