Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACLSSQ_RS01110 Genome accession   NZ_CP179682
Coordinates   217926..218288 (+) Length   120 a.a.
NCBI ID   WP_172974747.1    Uniprot ID   -
Organism   Azospira sp. APE16     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 212926..223288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLSSQ_RS01085 (ACLSSQ_01085) ppk2 213474..214673 (+) 1200 WP_014235776.1 polyphosphate kinase 2 -
  ACLSSQ_RS01090 (ACLSSQ_01090) hemL 214752..216035 (-) 1284 WP_416243550.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ACLSSQ_RS01095 (ACLSSQ_01095) thiE 216022..216672 (-) 651 WP_416243551.1 thiamine phosphate synthase -
  ACLSSQ_RS01100 (ACLSSQ_01100) thiD 216665..217507 (-) 843 WP_014235773.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACLSSQ_RS01105 (ACLSSQ_01105) - 217647..217799 (+) 153 WP_416244273.1 rubredoxin -
  ACLSSQ_RS01110 (ACLSSQ_01110) pilG 217926..218288 (+) 363 WP_172974747.1 response regulator Regulator
  ACLSSQ_RS01115 (ACLSSQ_01115) - 218310..218672 (+) 363 WP_014235770.1 response regulator transcription factor -
  ACLSSQ_RS01120 (ACLSSQ_01120) - 218687..219199 (+) 513 WP_014235769.1 chemotaxis protein CheW -
  ACLSSQ_RS01125 (ACLSSQ_01125) - 219279..221477 (+) 2199 WP_014235768.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13371.43 Da        Isoelectric Point: 6.9223

>NTDB_id=1092550 ACLSSQ_RS01110 WP_172974747.1 217926..218288(+) (pilG) [Azospira sp. APE16]
MVIDDSNTIRRSAEIFLVQAGCQVVLAEDGFDALAKIADHQPDIVFCDIMMPRLDGYQTCALIKKNARFRNTPVIMLSSK
DGLFDRARGRMVGSDQYLTKPFTKDSLLQAVATYGPQQVQ

Nucleotide


Download         Length: 363 bp        

>NTDB_id=1092550 ACLSSQ_RS01110 WP_172974747.1 217926..218288(+) (pilG) [Azospira sp. APE16]
ATGGTGATTGACGATAGCAATACCATCCGTCGCAGCGCTGAAATCTTCCTGGTGCAGGCAGGATGCCAGGTGGTGCTGGC
CGAGGACGGGTTCGATGCCCTGGCCAAGATCGCCGACCACCAACCAGACATCGTCTTCTGCGACATCATGATGCCCCGTC
TGGACGGTTACCAGACCTGCGCCCTGATCAAGAAAAACGCCCGTTTCCGCAACACCCCGGTGATCATGCTGTCCTCCAAG
GACGGCCTTTTTGACCGGGCCCGGGGGCGTATGGTCGGTTCCGACCAGTACCTCACCAAGCCCTTTACCAAAGACAGTTT
GCTGCAGGCTGTGGCCACCTACGGGCCCCAGCAGGTTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

69.298

95

0.658
  pilH Synechocystis sp. PCC 6803

40.541

92.5

0.375

Multiple sequence alignment