Detailed information NTG1092442

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACKW6E_RS13215
• Genome accession: NZ_CP178915
• Coordinates: 2898139..2899506 (+)
• Length: 455 a.a.
• NCBI ID: WP_054667220.1
• Uniprot ID: A0A0S1B260
• Organism: Stenotrophomonas acidaminiphila strain ZCMU-Sa01
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2893139..2904506

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKW6E_RS13195 (ACKW6E_13195)	-	2893369..2894052 (+)	684	WP_054667215.1	DUF3108 domain-containing protein	-
ACKW6E_RS13200 (ACKW6E_13200)	sucD	2894129..2895004 (-)	876	WP_054667217.1	succinate--CoA ligase subunit alpha	-
ACKW6E_RS13205 (ACKW6E_13205)	sucC	2895029..2896201 (-)	1173	WP_054667218.1	ADP-forming succinate--CoA ligase subunit beta	-
ACKW6E_RS13210 (ACKW6E_13210)	-	2896462..2898075 (+)	1614	WP_413975136.1	sensor histidine kinase	-
ACKW6E_RS13215 (ACKW6E_13215)	pilR	2898139..2899506 (+)	1368	WP_054667220.1	sigma-54-dependent transcriptional regulator	Regulator
ACKW6E_RS13220 (ACKW6E_13220)	-	2899684..2901612 (-)	1929	WP_413975137.1	sensor histidine kinase	-
ACKW6E_RS13225 (ACKW6E_13225)	-	2901615..2903807 (-)	2193	WP_243351914.1	EAL domain-containing protein	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49030.14 Da
• Isoelectric Point: 6.2561

>NTDB_id=1092442 ACKW6E_RS13215 WP_054667220.1 2898139..2899506(+) (pilR) [Stenotrophomonas acidaminiphila strain ZCMU-Sa01]
MNVTHSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLGSNSFDLCLTDMRLPDGNGIELVTEIARDHPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGMVKHALELNNSERVAQPAAPESASRLLGESQAMSDLRSTIAKVARS
QAPVYIVGESGVGKELVARTIHDQGARAAGPFIPVNCGAIPGELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRPVGSATEVPVDVRILSATHKDLAVLVQDGRFRHDLYYRINVIELRVPPLRERRGDLPQ
LAAAILSRLARSQQLPTPLLSPSALDALGGYAFPGNVRELENVLERALALADGDSIGASDLRLPTPRGDAGSASEEAPAD
IDAGNAALPSYIEQMERAAIQKALEENRWNRTRTAAQLGITFRALRYKLKKLGMD

Nucleotide

• Length: 1368 bp

>NTDB_id=1092442 ACKW6E_RS13215 WP_054667220.1 2898139..2899506(+) (pilR) [Stenotrophomonas acidaminiphila strain ZCMU-Sa01]
ATGAACGTGACGCATAGCGCGCTGGTCGTCGACGACGAACGGGACATCCGCGAACTCCTGGTCCTCACCCTCGGCAGGAT
GGGACTGCGCATCAGTACCGCCGCCAATCTGGCCGAAGCCCGCGAACTGCTGGGCAGCAACAGCTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCGCACGCGACCATCCGCGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAGGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCGGCGTGCTGCGCGGCATGGTCAAGCACGCGCTGGAGCTCAACAACAGCGAGCGCGTGGCGCAGCCCGCCGCAC
CGGAAAGCGCCTCGCGCCTGCTCGGCGAATCGCAGGCAATGTCCGACCTGCGCAGCACCATCGCCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTCGGCAAGGAACTGGTCGCGCGCACCATCCACGACCAGGGCGCGCG
CGCGGCCGGGCCGTTCATCCCGGTCAACTGCGGCGCCATCCCGGGCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGA
AGGGCAGCTTCACCGGCGCGCACGCGGACAAACCGGGACTGTTCCAGGCCGCGCATGGCGGCACCCTGTTCCTGGACGAA
GTCGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGTGCGATCCAGGAGAAGTCGGTGCGCCCGGTCGGCTCGGC
CACCGAGGTACCGGTGGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGCGGTGCTGGTGCAGGACGGCCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTCCCCCCGCTGCGCGAGCGGCGCGGCGACCTGCCGCAG
CTGGCCGCGGCCATCCTCAGCCGGCTGGCGCGCTCGCAGCAGCTGCCCACGCCGCTGTTGTCGCCCTCGGCGCTGGACGC
CCTGGGCGGTTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACGTACTGGAACGCGCGCTCGCCCTGGCCGATGGCG
ACAGCATCGGCGCCAGCGACCTGCGCCTGCCGACCCCGCGCGGCGATGCCGGCAGCGCGAGCGAAGAAGCTCCGGCCGAC
ATCGATGCCGGCAATGCCGCCCTTCCCTCGTACATCGAACAGATGGAACGCGCGGCCATCCAGAAGGCGCTGGAAGAAAA
CCGCTGGAACCGGACCCGCACCGCCGCGCAGTTGGGCATCACCTTCCGGGCGCTGCGCTACAAGCTCAAGAAGCTGGGCA
TGGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (412-452)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

• Response regulator receiver domain (Response_reg) (8-116)

3D structure

• AlphaFold DB: A0A0S1B260

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	64.302	99.121	0.637
pilR	Acinetobacter baumannii strain A118	48.913	100	0.495