Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACMDB8_RS23795 Genome accession   NZ_CP178857
Coordinates   5301379..5302716 (+) Length   445 a.a.
NCBI ID   WP_056728679.1    Uniprot ID   A0A0Q8HKS9
Organism   Pseudomonas sp. PLb12A     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5296379..5307716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMDB8_RS23770 (ACMDB8_23770) pgeF 5297815..5298540 (-) 726 WP_056728673.1 peptidoglycan editing factor PgeF -
  ACMDB8_RS23775 (ACMDB8_23775) rluD 5298537..5299499 (-) 963 WP_008052092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACMDB8_RS23780 (ACMDB8_23780) - 5299651..5300673 (+) 1023 WP_056728675.1 outer membrane protein assembly factor BamD -
  ACMDB8_RS23785 (ACMDB8_23785) - 5300800..5301033 (+) 234 WP_056728677.1 PP0621 family protein -
  ACMDB8_RS23790 (ACMDB8_23790) - 5301080..5301382 (+) 303 Protein_4671 hypothetical protein -
  ACMDB8_RS23795 (ACMDB8_23795) pilR 5301379..5302716 (+) 1338 WP_056728679.1 sigma-54-dependent transcriptional regulator Regulator
  ACMDB8_RS23800 (ACMDB8_23800) thiO 5302798..5303898 (-) 1101 WP_056728681.1 glycine oxidase ThiO -
  ACMDB8_RS23805 (ACMDB8_23805) - 5303953..5304354 (-) 402 WP_056728683.1 type IV pilin protein -
  ACMDB8_RS23810 (ACMDB8_23810) - 5304369..5304779 (-) 411 WP_056728685.1 hypothetical protein -
  ACMDB8_RS23815 (ACMDB8_23815) - 5304766..5305245 (-) 480 WP_056728687.1 PilX N-terminal domain-containing pilus assembly protein -
  ACMDB8_RS23820 (ACMDB8_23820) - 5305256..5305963 (-) 708 WP_409078807.1 PilW family protein -
  ACMDB8_RS23825 (ACMDB8_23825) pilV 5305960..5306409 (-) 450 WP_409078808.1 type IV pilus modification protein PilV -
  ACMDB8_RS23830 (ACMDB8_23830) - 5306406..5306879 (-) 474 WP_056728693.1 GspH/FimT family protein -
  ACMDB8_RS23835 (ACMDB8_23835) - 5307010..5307549 (+) 540 WP_056728695.1 GspH/FimT family protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49839.24 Da        Isoelectric Point: 7.0038

>NTDB_id=1091965 ACMDB8_RS23795 WP_056728679.1 5301379..5302716(+) (pilR) [Pseudomonas sp. PLb12A]
MNTRPRQKVLIVDDEPDIRELLEITLGRMNLETFNARNVGEAQSLLKRETFDLCLTDMQLPDGTGLELVQHIQQRHPQVQ
VAMITAYDSLENAINVLKAGAFDFLTKPVDLARLRELVTNALLVPAHGVGIERRLLGDSLPMRNLRKHITKLASSHATVY
ISGESGSGKELVARLIHDQSPRAHQPFIAINCAAIPSELLESEFFGHRKGSFSGAIEDKPGLFQTAHSGTLLLDEVADLP
LAMQVKLLRAIQEKSVRSVGGQQEVAVDVRILCATHKDLGAEVAAGRFRHDLYYRLNVIELRVPPLRERRDDIEMLASHI
LKRLAADTAQPAARLHPQALDALKSYRFPGNVRELENMLERAHTLCENKQIEAGDLRLAEGNCGAEVGVPDLTRIDNLEA
YLENVERQLLLQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1091965 ACMDB8_RS23795 WP_056728679.1 5301379..5302716(+) (pilR) [Pseudomonas sp. PLb12A]
TTGAACACCAGACCACGACAAAAAGTCCTGATCGTCGATGACGAACCGGACATTCGAGAACTCCTGGAAATCACCTTGGG
CAGGATGAATCTGGAGACGTTCAACGCCCGCAACGTTGGCGAAGCGCAATCCCTGCTCAAACGCGAAACCTTCGATCTAT
GCCTGACCGACATGCAATTGCCGGACGGCACCGGCCTGGAGTTGGTGCAACACATCCAGCAACGCCACCCTCAGGTCCAG
GTGGCGATGATCACCGCCTATGACAGCCTCGAAAACGCGATCAATGTGCTCAAGGCCGGGGCCTTCGACTTCCTGACCAA
ACCGGTGGACCTTGCGCGCCTGCGTGAACTGGTCACCAACGCCCTGCTGGTTCCTGCCCACGGAGTCGGCATCGAACGAC
GCTTGCTGGGCGATTCATTGCCCATGCGCAACCTGCGCAAGCACATCACCAAACTGGCCAGCAGCCATGCGACGGTCTAC
ATCAGCGGAGAGTCCGGCAGCGGCAAGGAGTTGGTCGCGCGCCTGATCCACGATCAAAGCCCCCGCGCCCATCAGCCGTT
CATTGCGATCAACTGCGCGGCGATTCCCTCGGAGCTGTTGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGTTTCAGCG
GTGCCATCGAAGACAAACCCGGCCTGTTCCAGACAGCCCACAGTGGCACCCTGCTCCTTGACGAAGTGGCCGACCTGCCG
CTGGCCATGCAAGTCAAACTGCTGCGCGCAATTCAGGAGAAATCCGTACGCAGCGTCGGCGGGCAGCAGGAAGTGGCTGT
GGATGTGCGCATTCTCTGCGCCACGCACAAAGACCTTGGTGCCGAAGTCGCCGCCGGACGTTTTCGTCATGATCTTTACT
ACCGCTTGAACGTAATCGAACTCCGGGTGCCGCCCTTGCGTGAACGTCGCGACGATATCGAAATGCTAGCTAGCCACATT
CTCAAGCGTCTGGCTGCCGATACCGCTCAACCTGCGGCGAGACTCCACCCCCAGGCCCTCGATGCACTGAAAAGCTATCG
CTTCCCGGGCAATGTGCGGGAACTGGAAAACATGCTCGAACGGGCACACACCTTGTGTGAGAACAAACAGATTGAAGCCG
GTGACCTGCGCTTGGCTGAAGGCAACTGTGGGGCTGAAGTTGGCGTGCCAGACCTGACCCGGATCGACAACCTGGAAGCC
TACCTGGAAAACGTCGAACGCCAACTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCCCAGCG
GTTGAACCTGTCATTCAGGTCGATGCGCTACAGGCTCAAGAAGTTGGGATTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q8HKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

74.718

99.551

0.744
  pilR Acinetobacter baumannii strain A118

47.93

100

0.494

Multiple sequence alignment