Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACMDB8_RS20635 Genome accession   NZ_CP178857
Coordinates   4623029..4623664 (-) Length   211 a.a.
NCBI ID   WP_056727235.1    Uniprot ID   -
Organism   Pseudomonas sp. PLb12A     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4618029..4628664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMDB8_RS20600 (ACMDB8_20600) - 4618423..4618893 (-) 471 WP_015096391.1 (2Fe-2S)-binding protein -
  ACMDB8_RS20605 (ACMDB8_20605) murB 4619143..4620162 (-) 1020 WP_056727230.1 UDP-N-acetylmuramate dehydrogenase -
  ACMDB8_RS20610 (ACMDB8_20610) - 4620159..4620623 (-) 465 WP_056727231.1 low molecular weight protein-tyrosine-phosphatase -
  ACMDB8_RS20615 (ACMDB8_20615) kdsB 4620623..4621387 (-) 765 WP_056727232.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACMDB8_RS20620 (ACMDB8_20620) - 4621384..4621569 (-) 186 WP_003179363.1 Trm112 family protein -
  ACMDB8_RS20625 (ACMDB8_20625) lpxK 4621594..4622604 (-) 1011 WP_056727233.1 tetraacyldisaccharide 4'-kinase -
  ACMDB8_RS20630 (ACMDB8_20630) - 4622604..4623032 (-) 429 WP_056727234.1 ExbD/TolR family protein -
  ACMDB8_RS20635 (ACMDB8_20635) exbB 4623029..4623664 (-) 636 WP_056727235.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACMDB8_RS20640 (ACMDB8_20640) comA 4623763..4625997 (-) 2235 WP_409078933.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACMDB8_RS20645 (ACMDB8_20645) - 4626133..4626648 (+) 516 WP_409078934.1 DUF2062 domain-containing protein -
  ACMDB8_RS20650 (ACMDB8_20650) - 4626746..4627525 (-) 780 WP_008054107.1 ABC transporter permease -
  ACMDB8_RS20655 (ACMDB8_20655) - 4627522..4628454 (-) 933 WP_056727238.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 7.3615

>NTDB_id=1091960 ACMDB8_RS20635 WP_056727235.1 4623029..4623664(-) (exbB) [Pseudomonas sp. PLb12A]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKKLNKDRLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1091960 ACMDB8_RS20635 WP_056727235.1 4623029..4623664(-) (exbB) [Pseudomonas sp. PLb12A]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTTTGAGTTCCATCGCGGCCATGGCGATCGTTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCACTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGAAACTCAACAAAGACAGACTCAAGGAACTGCGCGCCAACTCGCCGCTGGGTGAGATCCTCGCCGCGGGCCTTGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCTGCTGCGCGGGTCATCCACGATCTGGAACGTTACAT
CAACGCCCTCGGCACTATTGCTGCCATGGCCCCGTTGCTGGGCTTGCTTGGTACCGTGCTGGGCATGATCGATATTTTCA
GCGCGTTTACCGGCAGTGGCATGACCACCAACGCTTCGGTGCTGGCCGGTGGTATTTCCAAGGCCCTGATCACCACGGCC
GCCGGTTTGATGGTCGGTATCCCGGCGGTATTCTTCCATCGATTCCTGCAACGCCGGATCGATGAGCTGGTGGTAGGGAT
GGAGCAGGAAGCGATCAAACTGGTCGAGGTAGTGCAGGGCGACCGCGACGTGGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment