Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACMDB6_RS02170 Genome accession   NZ_CP178852
Coordinates   398903..400696 (+) Length   597 a.a.
NCBI ID   WP_050884646.1    Uniprot ID   -
Organism   Leuconostoc mesenteroides strain F17     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 393903..405696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMDB6_RS02150 (ACMDB6_02150) - 394078..395520 (+) 1443 WP_413981501.1 ABC transporter substrate-binding protein/permease -
  ACMDB6_RS02155 (ACMDB6_02155) - 395517..396269 (+) 753 WP_025267784.1 amino acid ABC transporter ATP-binding protein -
  ACMDB6_RS02160 (ACMDB6_02160) - 396336..397781 (+) 1446 WP_096638949.1 ABC transporter substrate-binding protein/permease -
  ACMDB6_RS02165 (ACMDB6_02165) - 397823..398845 (+) 1023 WP_413981502.1 competence protein CoiA -
  ACMDB6_RS02170 (ACMDB6_02170) pepF 398903..400696 (+) 1794 WP_050884646.1 oligoendopeptidase F Regulator
  ACMDB6_RS02175 (ACMDB6_02175) - 400807..401196 (+) 390 WP_011679291.1 cytidine deaminase -
  ACMDB6_RS02180 (ACMDB6_02180) - 401213..401653 (+) 441 WP_004164656.1 nucleoside 2-deoxyribosyltransferase -
  ACMDB6_RS02185 (ACMDB6_02185) - 401653..402582 (+) 930 WP_011679292.1 phosphoglycerate dehydrogenase -
  ACMDB6_RS02190 (ACMDB6_02190) - 402602..402970 (+) 369 WP_050884644.1 winged helix-turn-helix transcriptional regulator -
  ACMDB6_RS02195 (ACMDB6_02195) pheS 403274..404323 (+) 1050 WP_025267790.1 phenylalanine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 67716.51 Da        Isoelectric Point: 4.6684

>NTDB_id=1091933 ACMDB6_RS02170 WP_050884646.1 398903..400696(+) (pepF) [Leuconostoc mesenteroides strain F17]
MSEKQLLRNQVPENLTWDLSSIFPTDEAWETAFNETRKSAQALSKYAGHVGDSADVLKEALEADLAVERQFEKVYVYAHQ
IYDQDTTNQKYSAYNARVQGLYAELSANTAFFQPEVLALSNETLDAYLATAGLKKYAHFFDVLKARKPHTLPAEQEALLA
GASDIFNASEQTFGALDNSDIVFGDVHTETGEIVPLTNGLYSLLLESKDRSLREEAFTTLYDSYIALQNTFASTLSSHVK
GHNFLAKTRHYDSARQAAVTANDIPESVFETLTKTVDANLPLLHRFVSLRKKILNVDDVHSYDLYVPLVDEINFEVTYEK
AKGIVLAALAPLGEDYIAIVQKAFDERWIDVVENKGKRTGAYSSGSYDTKPFILLNWQNNLNNVYTLAHEMGHSVHSYFT
RHNQEYHYGDYPIFLAEIASTTNEGLLTDYLLKTNDDPKFQAYVLNQYLDGFKGTVFRQTQFAEFEQWIHEQSAAGVALT
ADEMSIFYGSLNQKFYGSDLFPDEAIAYEWARIPHFYYNFYVYQYSTGEAAATTLAERILTQNGAEDYKNYLKAGNSDYA
LNVIKKAGVNMSQPDYLNEAFKVFEERLNEFEKIMLK

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=1091933 ACMDB6_RS02170 WP_050884646.1 398903..400696(+) (pepF) [Leuconostoc mesenteroides strain F17]
ATGTCTGAAAAACAACTATTACGTAATCAAGTACCAGAAAATCTTACATGGGATCTATCCTCAATTTTTCCGACAGATGA
AGCTTGGGAAACCGCTTTTAATGAGACACGAAAGTCTGCACAAGCATTAAGCAAGTATGCTGGACACGTCGGGGATTCTG
CGGATGTTTTGAAAGAAGCCTTAGAAGCAGATTTAGCAGTAGAACGTCAATTCGAAAAAGTCTACGTATATGCTCATCAA
ATTTATGATCAAGATACAACTAATCAAAAGTATAGTGCATATAATGCTCGTGTTCAAGGCTTATATGCTGAATTAAGTGC
GAATACAGCTTTCTTCCAGCCTGAAGTGTTAGCATTGTCAAACGAGACACTAGATGCATACTTAGCGACAGCTGGTTTGA
AAAAATATGCACACTTCTTTGACGTTTTAAAAGCTCGTAAACCGCATACGCTACCTGCAGAACAGGAAGCCTTACTAGCA
GGAGCAAGCGACATCTTTAATGCTTCTGAACAGACTTTTGGTGCATTGGATAATTCAGATATTGTTTTTGGTGATGTCCA
TACTGAAACAGGTGAAATTGTGCCATTGACAAATGGACTCTATTCATTGTTGTTGGAGTCTAAAGATCGTTCATTGCGTG
AGGAAGCGTTCACAACGCTTTATGATAGTTATATTGCTTTGCAAAATACATTTGCCTCAACGTTATCTTCACATGTCAAG
GGACATAACTTTTTGGCTAAAACTCGTCACTATGATTCAGCTCGTCAAGCTGCTGTAACAGCCAATGATATTCCTGAGTC
AGTTTTTGAAACATTAACCAAAACAGTTGATGCCAATCTGCCATTACTACACCGTTTTGTATCATTACGTAAAAAAATTC
TTAATGTTGACGATGTACACTCTTACGATTTATATGTACCACTTGTTGATGAAATTAATTTTGAAGTAACATATGAAAAA
GCAAAAGGCATTGTTTTGGCGGCTTTGGCACCGTTAGGCGAGGATTACATCGCTATTGTTCAAAAGGCTTTTGATGAACG
ATGGATTGATGTGGTTGAAAACAAGGGGAAGCGTACTGGCGCTTATTCAAGCGGTTCGTATGATACAAAACCATTCATTT
TGCTTAACTGGCAGAACAATTTGAATAATGTTTATACGTTGGCTCATGAAATGGGACATTCGGTTCATTCATACTTTACA
CGCCATAATCAAGAGTATCATTATGGCGATTATCCAATATTCTTAGCTGAAATTGCTTCAACTACTAATGAGGGATTATT
AACGGATTATTTGCTAAAGACAAATGATGATCCCAAGTTTCAGGCCTACGTATTGAACCAGTATTTAGATGGATTCAAAG
GAACAGTTTTCCGCCAAACTCAATTTGCTGAGTTTGAGCAATGGATTCATGAACAAAGCGCGGCTGGAGTGGCTTTGACA
GCTGATGAGATGAGTATATTCTATGGATCGTTGAATCAAAAGTTTTATGGATCGGACTTATTTCCAGATGAAGCTATTGC
TTATGAATGGGCACGTATTCCACATTTTTATTACAATTTCTATGTTTATCAATATTCGACAGGCGAAGCTGCTGCCACAA
CTTTGGCAGAACGCATACTAACACAAAATGGTGCTGAGGATTATAAGAACTATCTGAAAGCAGGTAATTCAGATTATGCT
TTAAATGTAATCAAAAAAGCTGGCGTTAACATGAGTCAACCGGACTATTTAAATGAAGCTTTCAAAGTGTTTGAAGAGCG
ATTAAATGAGTTTGAAAAAATCATGTTAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(115-183)

Peptidase family M3 (Peptidase_M3)

(204-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.445

99.33

0.521

Multiple sequence alignment