Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACGG81_RS03325 Genome accession   NZ_AP031411
Coordinates   664420..666252 (+) Length   610 a.a.
NCBI ID   WP_390109580.1    Uniprot ID   -
Organism   Faecalimonas umbilicata strain f12     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 659420..671252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGG81_RS03305 (F120042H4_06220) - 659601..660107 (-) 507 WP_009263010.1 hypothetical protein -
  ACGG81_RS03310 (F120042H4_06230) - 660389..661225 (+) 837 WP_390109575.1 RNA-guided endonuclease InsQ/TnpB family protein -
  ACGG81_RS03315 (F120042H4_06240) - 661732..662178 (+) 447 WP_008976563.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACGG81_RS03320 (F120042H4_06250) - 662180..664417 (+) 2238 WP_390109578.1 ABC transporter ATP-binding protein -
  ACGG81_RS03325 (F120042H4_06260) rcrQ 664420..666252 (+) 1833 WP_390109580.1 ABC transporter ATP-binding protein Regulator
  ACGG81_RS03330 (F120042H4_06270) - 666406..667884 (-) 1479 WP_008976560.1 DUF1846 domain-containing protein -
  ACGG81_RS03335 (F120042H4_06280) ftsH 668137..670137 (+) 2001 WP_016439409.1 ATP-dependent zinc metalloprotease FtsH -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 68022.47 Da        Isoelectric Point: 6.3549

>NTDB_id=109148 ACGG81_RS03325 WP_390109580.1 664420..666252(+) (rcrQ) [Faecalimonas umbilicata strain f12]
MSKGQRHGGGHMGGMRAGEKAKDFKGTMKKLLKYMSAYKLGIFAVMLFAVGSTIFTIVGPKILGKATTEIFHGLVSKVSG
GSGIDFDKITQILLFLLGLYVLSALFSFIQGFIMTGVSQKLTYKLRKEISEKINRMPMNYFDTKTHGEVLSRVTNDVDTL
SQSLNQSATQIITSFTTIIGILAMMLSISPLMTVVALLILPVSMLLISTIVKKSQKHFKNQQEYLGHVNGQVEEVYGGHS
IVRAFNKEDDVIREFTETNEILYQSAWKSQFFSGMMMPIMQFIGNLGYVAVAILGGYLAIKDAIEVGDIQSFIQYVRSFT
QPITQVAQVANMLQSTAAASERVFEFLEEEEEDQFAEHPVSVEGLKGDVEFKHVHFGYNEDRIIINDFSAKVKEGQKIAI
VGPTGAGKTTMIKLLMRFYDVNSGEILIDGHNLKDFNRSELRQMFGMVLQDTWLFHGSIKDNIRYGKLDATDEEVVEAAK
AAYVHRFVQTLPDGYDMELNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEIRIQKAMDNLMKGRTSFII
AHRLSTIRDADLILVMKDGDIVEQGNHEELLEKGGFYANLYNSQFEQTGA

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=109148 ACGG81_RS03325 WP_390109580.1 664420..666252(+) (rcrQ) [Faecalimonas umbilicata strain f12]
ATGAGTAAAGGACAAAGACATGGTGGTGGCCATATGGGCGGCATGCGAGCCGGAGAGAAAGCAAAAGATTTCAAAGGCAC
AATGAAGAAACTCCTGAAATATATGAGCGCATATAAGTTGGGAATATTTGCAGTGATGCTTTTTGCAGTCGGAAGTACGA
TATTCACTATCGTAGGACCGAAGATTCTTGGAAAAGCCACAACAGAAATCTTTCATGGACTTGTAAGCAAAGTGTCAGGT
GGAAGTGGAATTGATTTTGACAAAATTACGCAAATCCTTCTGTTTCTGTTAGGATTGTATGTGTTGAGTGCGCTGTTCTC
CTTTATTCAGGGATTTATTATGACAGGAGTGTCCCAGAAGCTGACTTACAAACTCAGAAAAGAAATTTCTGAGAAGATCA
ACCGTATGCCGATGAATTATTTTGATACAAAGACGCACGGCGAGGTGCTTTCCAGAGTTACCAATGACGTGGATACATTA
AGCCAGAGTTTGAACCAGAGTGCGACACAGATCATTACTTCTTTTACGACGATCATAGGTATTTTGGCTATGATGCTCAG
CATCAGTCCTCTGATGACTGTTGTAGCATTGTTAATTCTTCCGGTGTCAATGCTCCTGATTTCCACGATTGTAAAGAAAT
CACAGAAACACTTCAAGAATCAACAAGAGTATTTGGGACATGTCAACGGACAGGTAGAGGAGGTCTATGGAGGCCACAGC
ATTGTCAGAGCATTTAACAAGGAAGATGATGTCATCCGGGAGTTTACTGAGACAAATGAAATTTTATATCAGTCTGCATG
GAAATCTCAGTTTTTCTCGGGGATGATGATGCCGATCATGCAGTTTATTGGAAATCTTGGATATGTGGCAGTAGCAATTT
TAGGTGGATATCTGGCAATCAAAGATGCGATTGAAGTCGGAGATATCCAGTCCTTTATCCAATATGTAAGAAGTTTTACG
CAGCCAATCACACAGGTGGCACAGGTGGCCAATATGTTACAGTCTACAGCGGCAGCTTCTGAGAGAGTTTTTGAATTTTT
GGAAGAAGAGGAAGAAGACCAGTTTGCAGAGCATCCGGTTTCCGTAGAGGGATTGAAGGGAGATGTAGAATTTAAACATG
TTCATTTTGGATATAATGAAGATCGTATAATTATCAATGACTTCTCTGCAAAGGTGAAGGAAGGACAGAAAATTGCCATT
GTAGGACCGACCGGAGCAGGAAAGACAACAATGATCAAACTTCTGATGAGATTTTACGATGTCAACAGTGGAGAAATTTT
GATCGATGGACATAATCTGAAAGATTTTAACAGAAGTGAACTTCGACAGATGTTTGGAATGGTGCTGCAAGATACATGGC
TGTTCCATGGATCGATCAAAGACAATATCCGCTATGGAAAGCTTGATGCGACCGATGAAGAAGTCGTAGAGGCAGCAAAG
GCAGCATATGTACACCGGTTTGTGCAGACCCTTCCAGATGGATATGATATGGAGTTGAATGAGGAAGCAAGCAATGTATC
ACAGGGACAAAAGCAGTTGCTTACGATTGCAAGAGCGATTCTGGCAGATCCAAAGATTTTGATCTTAGACGAGGCGACTA
GCTCAGTGGATACAAGAACGGAAATCAGGATCCAGAAAGCTATGGATAATCTGATGAAGGGCAGAACAAGTTTTATCATC
GCGCATAGATTGTCTACAATCCGTGATGCGGATTTGATCCTTGTTATGAAGGATGGAGATATCGTAGAGCAGGGAAATCA
TGAAGAGCTGTTGGAAAAAGGTGGATTTTATGCAAATCTCTATAATTCTCAGTTTGAGCAGACAGGTGCATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(43-322)

ABC transporter (ABC_tran)

(386-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.282

95.902

0.492

Multiple sequence alignment