Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACL6ER_RS00960 Genome accession   NZ_CP178717
Coordinates   197831..198280 (-) Length   149 a.a.
NCBI ID   WP_268332506.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SY1167     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 192831..203280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6ER_RS00930 (ACL6ER_00930) - 192979..193659 (-) 681 WP_019257432.1 amino acid ABC transporter permease -
  ACL6ER_RS00935 (ACL6ER_00935) - 193669..194532 (-) 864 WP_268332504.1 transporter substrate-binding domain-containing protein -
  ACL6ER_RS00940 (ACL6ER_00940) - 194915..195370 (+) 456 WP_003241134.1 RDD family protein -
  ACL6ER_RS00945 (ACL6ER_00945) - 195452..195784 (+) 333 WP_003241133.1 YckD family protein -
  ACL6ER_RS00950 (ACL6ER_00950) bglC 195936..197369 (+) 1434 WP_268332505.1 6-phospho-beta-glucosidase -
  ACL6ER_RS00955 (ACL6ER_00955) nin/comJ 197406..197804 (-) 399 WP_133488532.1 DNA-entry nuclease inhibitor Regulator
  ACL6ER_RS00960 (ACL6ER_00960) nucA/comI 197831..198280 (-) 450 WP_268332506.1 DNA-entry nuclease Machinery gene
  ACL6ER_RS00965 (ACL6ER_00965) tlpC 198455..200179 (-) 1725 WP_413325949.1 methyl-accepting chemotaxis protein TlpC -
  ACL6ER_RS00970 (ACL6ER_00970) hxlB 200291..200848 (-) 558 WP_225516474.1 6-phospho-3-hexuloisomerase -
  ACL6ER_RS00975 (ACL6ER_00975) hxlA 200854..201486 (-) 633 WP_003241120.1 3-hexulose-6-phosphate synthase -
  ACL6ER_RS00980 (ACL6ER_00980) hxlR 201718..202080 (+) 363 WP_003241118.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16467.48 Da        Isoelectric Point: 4.5761

>NTDB_id=1090813 ACL6ER_RS00960 WP_268332506.1 197831..198280(-) (nucA/comI) [Bacillus inaquosorum strain SY1167]
MNITMDIIKTILLVIVVIAAAAVSLIKGDFFSADQKTSQTKQYDETIAFPSDRYPETAKHIKDAINEGHSDVCTIDRDGA
EERREQSLKDVPPKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTNYPDGTKILFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1090813 ACL6ER_RS00960 WP_268332506.1 197831..198280(-) (nucA/comI) [Bacillus inaquosorum strain SY1167]
GTGAACATCACGATGGACATCATAAAAACGATACTTCTCGTCATCGTCGTCATAGCAGCTGCAGCTGTCAGCCTGATAAA
GGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAACAATATGACGAAACAATCGCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCAAAACATATAAAGGATGCGATAAATGAGGGGCACTCAGATGTGTGTACCATCGACAGGGACGGAGCT
GAGGAACGCCGTGAGCAATCATTAAAAGACGTACCGCCTAAAACGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGGGCTTCTGTAGAATATATTTCTCCCGCTGACAACCGCGGTGCAGGTTCTTGGGTCGGGCATC
AGCTTACCAATTATCCTGACGGCACAAAGATTTTATTCACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

92.617

100

0.926

Multiple sequence alignment