Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACL6EQ_RS17420 Genome accession   NZ_CP178716
Coordinates   3365602..3366291 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SY1483     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3360602..3371291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS17385 (ACL6EQ_17385) flgN 3360782..3361264 (-) 483 WP_014481048.1 flagellar protein FlgN -
  ACL6EQ_RS17390 (ACL6EQ_17390) flgM 3361280..3361546 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACL6EQ_RS17395 (ACL6EQ_17395) yvyF 3361627..3362046 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ACL6EQ_RS17400 (ACL6EQ_17400) comFC 3362120..3362842 (-) 723 WP_130572909.1 comF operon protein ComFC Machinery gene
  ACL6EQ_RS17405 (ACL6EQ_17405) comFB 3362806..3363102 (-) 297 WP_015483764.1 late competence protein ComFB -
  ACL6EQ_RS17410 (ACL6EQ_17410) comFA 3363162..3364553 (-) 1392 WP_086344383.1 ATP-dependent helicase ComFA Machinery gene
  ACL6EQ_RS17415 (ACL6EQ_17415) fakBA 3364659..3365504 (-) 846 WP_086344384.1 DegV family protein -
  ACL6EQ_RS17420 (ACL6EQ_17420) degU 3365602..3366291 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACL6EQ_RS17425 (ACL6EQ_17425) degS 3366374..3367531 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ACL6EQ_RS17430 (ACL6EQ_17430) yvyE 3367748..3368401 (+) 654 WP_003227979.1 YigZ family protein -
  ACL6EQ_RS17435 (ACL6EQ_17435) tagV 3368401..3369576 (+) 1176 WP_017695311.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  ACL6EQ_RS17440 (ACL6EQ_17440) tagO 3369649..3370725 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1090797 ACL6EQ_RS17420 WP_003219701.1 3365602..3366291(-) (degU) [Bacillus subtilis strain SY1483]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1090797 ACL6EQ_RS17420 WP_003219701.1 3365602..3366291(-) (degU) [Bacillus subtilis strain SY1483]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment