Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACL6EQ_RS17400 Genome accession   NZ_CP178716
Coordinates   3362120..3362842 (-) Length   240 a.a.
NCBI ID   WP_130572909.1    Uniprot ID   -
Organism   Bacillus subtilis strain SY1483     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3357120..3367842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS17365 (ACL6EQ_17365) fliW 3357259..3357690 (-) 432 WP_077671018.1 flagellar assembly protein FliW -
  ACL6EQ_RS17370 (ACL6EQ_17370) yviE 3357711..3358286 (-) 576 WP_015384781.1 DUF6470 family protein -
  ACL6EQ_RS17375 (ACL6EQ_17375) flgL 3358333..3359229 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  ACL6EQ_RS17380 (ACL6EQ_17380) flgK 3359240..3360763 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  ACL6EQ_RS17385 (ACL6EQ_17385) flgN 3360782..3361264 (-) 483 WP_014481048.1 flagellar protein FlgN -
  ACL6EQ_RS17390 (ACL6EQ_17390) flgM 3361280..3361546 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACL6EQ_RS17395 (ACL6EQ_17395) yvyF 3361627..3362046 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ACL6EQ_RS17400 (ACL6EQ_17400) comFC 3362120..3362842 (-) 723 WP_130572909.1 comF operon protein ComFC Machinery gene
  ACL6EQ_RS17405 (ACL6EQ_17405) comFB 3362806..3363102 (-) 297 WP_015483764.1 late competence protein ComFB -
  ACL6EQ_RS17410 (ACL6EQ_17410) comFA 3363162..3364553 (-) 1392 WP_086344383.1 ATP-dependent helicase ComFA Machinery gene
  ACL6EQ_RS17415 (ACL6EQ_17415) fakBA 3364659..3365504 (-) 846 WP_086344384.1 DegV family protein -
  ACL6EQ_RS17420 (ACL6EQ_17420) degU 3365602..3366291 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACL6EQ_RS17425 (ACL6EQ_17425) degS 3366374..3367531 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27496.69 Da        Isoelectric Point: 9.1349

>NTDB_id=1090795 ACL6EQ_RS17400 WP_130572909.1 3362120..3362842(-) (comFC) [Bacillus subtilis strain SY1483]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRSRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMDIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1090795 ACL6EQ_RS17400 WP_130572909.1 3362120..3362842(-) (comFC) [Bacillus subtilis strain SY1483]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGAGCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTATC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGGATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983

Multiple sequence alignment