Detailed information NTG1090707

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: ACLKML_RS18355
• Genome accession: NZ_CP178628
• Coordinates: 2362766..2364190 (-)
• Length: 474 a.a.
• NCBI ID: WP_413284414.1
• Uniprot ID: -
• Organism: Vibrio sp. MA40-2
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2357766..2369190

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLKML_RS18335 (ACLKML_18335)	cdd	2358762..2359649 (-)	888	WP_413284411.1	cytidine deaminase	-
ACLKML_RS18340 (ACLKML_18340)	-	2360121..2361485 (-)	1365	WP_413284412.1	DEAD/DEAH box helicase	-
ACLKML_RS18345 (ACLKML_18345)	-	2361659..2362348 (-)	690	WP_413285929.1	LrgB family protein	-
ACLKML_RS18350 (ACLKML_18350)	-	2362348..2362710 (-)	363	WP_413284413.1	CidA/LrgA family protein	-
ACLKML_RS18355 (ACLKML_18355)	sbcB	2362766..2364190 (-)	1425	WP_413284414.1	exodeoxyribonuclease I	Machinery gene
ACLKML_RS18360 (ACLKML_18360)	-	2364280..2365095 (-)	816	WP_413284415.1	NAD(P)H-binding protein	-
ACLKML_RS18365 (ACLKML_18365)	-	2365365..2366318 (+)	954	WP_413284416.1	lactate/malate family dehydrogenase	-
ACLKML_RS18370 (ACLKML_18370)	-	2366676..2367707 (+)	1032	WP_413284417.1	succinylglutamate desuccinylase	-
ACLKML_RS18375 (ACLKML_18375)	-	2367830..2368612 (-)	783	WP_317716688.1	sterol desaturase family protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54621.13 Da
• Isoelectric Point: 5.1405

>NTDB_id=1090707 ACLKML_RS18355 WP_413284414.1 2362766..2364190(-) (sbcB) [Vibrio sp. MA40-2]
MNTSEQPTFFWFDYETWGTDPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPCDYLPSPEAALITGITPQKAIKDGLPEP
EFIKLIHQALSTPNTTSLGYNSIRFDDEVTRYTLYRNFHDPYAWSWKNGNSRWDLLDVMRTCYALRPEGINWPIDSEGKP
TFRLEKLSQANGIEHENAHDAMADVIATIELAKKLKAAQPKLFNYLFNMRHKRKLNELIDIVNLTPLVHVSGMFGVSCSN
ISWIVPMAWHPKNQNAVITINLAMDPTPLLELTSDEIRQRMYTKRDALLPDQLPIPLKLVHLNKCPILAPAKTLTSDNAE
RIGINREQCLQNLSLIKNHPEIREKLVELYSVEREYPDNQDVDSQLYSGFFTPADRTAMDIILETKPENLAALDIQFGDK
RIAPLLFNYQARNYPETLDEQQQQRWASSCRDYFEASLPNYILNLENLAHEHENDEKKMRILKSVYNYVEQLVS

Nucleotide

• Length: 1425 bp

>NTDB_id=1090707 ACLKML_RS18355 WP_413284414.1 2362766..2364190(-) (sbcB) [Vibrio sp. MA40-2]
ATGAATACAAGCGAACAACCGACATTTTTTTGGTTTGATTATGAAACGTGGGGAACCGACCCAGCCAAAGACCGACCAAG
CCAATTTGCAGGTGTTCGAACGGATATGGACTTTAATATTATCGGCGAACCTCTCGTTATATATTGCCAACCGCCTTGTG
ATTATCTTCCTTCGCCTGAAGCAGCTCTCATCACAGGTATTACGCCACAAAAGGCAATAAAGGATGGCTTACCTGAACCG
GAATTTATTAAGTTAATACACCAAGCTCTCTCTACACCCAACACAACGAGTTTAGGTTACAATAGCATTCGATTTGACGA
TGAAGTTACCCGTTATACCTTATACCGAAATTTTCATGACCCTTACGCATGGAGTTGGAAAAATGGCAACTCTCGTTGGG
ATCTGCTCGATGTAATGCGCACCTGTTACGCCCTTCGCCCAGAAGGAATCAATTGGCCAATTGATTCAGAAGGTAAGCCT
ACATTCAGGTTAGAGAAGCTATCCCAAGCCAATGGTATTGAACATGAAAATGCGCATGATGCAATGGCCGATGTTATTGC
AACCATTGAATTAGCGAAAAAGTTGAAAGCAGCGCAGCCGAAACTGTTTAATTACTTATTTAACATGCGGCATAAAAGAA
AATTAAATGAACTTATTGATATTGTAAATCTTACTCCGCTAGTTCATGTATCGGGTATGTTTGGCGTCAGTTGTTCAAAT
ATAAGTTGGATTGTCCCAATGGCATGGCACCCTAAAAATCAAAACGCCGTTATAACCATCAATCTTGCTATGGACCCAAC
GCCTCTTTTAGAATTAACAAGTGACGAAATTCGCCAGCGTATGTACACAAAGCGTGATGCGCTATTACCTGATCAATTAC
CAATTCCACTAAAATTAGTGCATTTAAATAAGTGCCCTATTCTTGCACCTGCTAAAACATTAACCTCAGATAACGCCGAG
CGTATCGGTATCAATAGAGAACAGTGTCTACAGAATCTATCCTTGATAAAAAATCATCCTGAGATTCGAGAAAAGCTGGT
CGAACTATATTCTGTTGAAAGAGAGTATCCAGATAACCAAGACGTCGATAGCCAACTTTACTCCGGTTTTTTCACCCCAG
CCGATCGAACGGCGATGGACATTATCCTTGAAACAAAACCAGAAAATCTCGCCGCTTTGGATATTCAATTTGGTGACAAA
CGAATTGCTCCTTTGTTGTTCAATTATCAAGCAAGAAACTACCCCGAAACCTTAGACGAACAACAACAACAACGTTGGGC
TAGCAGTTGCAGAGACTACTTTGAGGCATCACTGCCCAATTACATTTTAAATTTAGAAAACCTTGCTCATGAACATGAGA
ACGATGAGAAAAAAATGCGCATTTTAAAGTCTGTTTACAATTATGTAGAACAATTGGTTTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-471)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	71.459	99.789	0.713