Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   ACLKML_RS14420 Genome accession   NZ_CP178628
Coordinates   1485934..1486545 (-) Length   203 a.a.
NCBI ID   WP_413283777.1    Uniprot ID   -
Organism   Vibrio sp. MA40-2     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1480934..1491545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKML_RS14410 (ACLKML_14410) aceF 1482223..1484103 (+) 1881 WP_413283776.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  ACLKML_RS14415 (ACLKML_14415) lpdA 1484339..1485766 (+) 1428 WP_317716890.1 dihydrolipoyl dehydrogenase -
  ACLKML_RS14420 (ACLKML_14420) opaR 1485934..1486545 (-) 612 WP_413283777.1 TetR family transcriptional regulator Regulator
  ACLKML_RS14425 (ACLKML_14425) hpt 1486922..1487452 (+) 531 WP_413283778.1 hypoxanthine phosphoribosyltransferase -
  ACLKML_RS14430 (ACLKML_14430) can 1487537..1488196 (-) 660 WP_413283779.1 carbonate dehydratase -
  ACLKML_RS14435 (ACLKML_14435) - 1488493..1489410 (+) 918 WP_413283780.1 ABC transporter ATP-binding protein -
  ACLKML_RS14440 (ACLKML_14440) - 1489417..1490187 (+) 771 WP_413283781.1 ABC transporter permease -
  ACLKML_RS14445 (ACLKML_14445) panC 1490257..1491159 (-) 903 WP_413283782.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23531.87 Da        Isoelectric Point: 6.3812

>NTDB_id=1090700 ACLKML_RS14420 WP_413283777.1 1485934..1486545(-) (opaR) [Vibrio sp. MA40-2]
MDMIKKHPRTRLSPQKRKLQLMDIALEVFARRGIGRGGHADIADVAQVSVATVFNYFPTREDLVDEILHHVVRQFSGFLN
ENLDTSLHARENLKNVAESMCELVLQDTHWLKIWFEWSASARDEVWPLYVSLNKNSRLLVENMFTQSIERGEISAQQNPE
NLAKMFQAICYAIYLEANRNGDKEHLTAFTTNFLDMLCIYNDK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=1090700 ACLKML_RS14420 WP_413283777.1 1485934..1486545(-) (opaR) [Vibrio sp. MA40-2]
ATGGATATGATAAAAAAACATCCCCGAACTCGCTTATCACCTCAAAAACGCAAACTGCAATTGATGGATATAGCATTAGA
AGTTTTCGCTCGTCGCGGTATTGGCCGTGGCGGTCATGCAGATATCGCGGACGTTGCACAAGTTTCAGTTGCAACTGTCT
TTAATTATTTCCCAACCAGAGAAGATTTAGTTGACGAAATACTACATCACGTAGTTCGTCAATTTTCAGGCTTTCTTAAC
GAAAATCTTGATACTTCTTTACACGCTAGAGAAAACCTGAAAAACGTAGCAGAATCTATGTGTGAACTTGTTCTACAAGA
TACACATTGGTTAAAAATTTGGTTTGAATGGAGTGCTTCCGCTCGTGATGAAGTATGGCCGCTTTACGTCTCTCTGAATA
AAAATAGCCGACTTTTAGTGGAGAATATGTTTACCCAATCCATTGAACGCGGAGAAATAAGCGCACAGCAAAATCCAGAA
AACTTAGCGAAAATGTTTCAAGCGATTTGTTACGCTATTTATTTAGAAGCCAATAGAAACGGTGATAAAGAACATTTAAC
CGCTTTCACCACCAATTTTTTAGACATGCTTTGTATCTACAACGATAAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

66.667

99.015

0.66
  hapR Vibrio cholerae C6706

59.296

98.03

0.581
  hapR Vibrio cholerae strain A1552

59.296

98.03

0.581

Multiple sequence alignment