Detailed information NTG1090685

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACLKML_RS09755
• Genome accession: NZ_CP178628
• Coordinates: 503083..504078 (-)
• Length: 331 a.a.
• NCBI ID: WP_413285178.1
• Uniprot ID: -
• Organism: Vibrio sp. MA40-2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 498083..509078

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLKML_RS09735 (ACLKML_09735)	btuF	498088..498915 (+)	828	WP_413285174.1	vitamin B12 ABC transporter substrate-binding protein BtuF	-
ACLKML_RS09740 (ACLKML_09740)	-	498993..499613 (+)	621	WP_413285175.1	TRIC cation channel family protein	-
ACLKML_RS09745 (ACLKML_09745)	-	499699..500181 (-)	483	WP_413285176.1	CinA family protein	-
ACLKML_RS09750 (ACLKML_09750)	mutS	500446..503007 (+)	2562	WP_413285177.1	DNA mismatch repair protein MutS	-
ACLKML_RS09755 (ACLKML_09755)	rpoS	503083..504078 (-)	996	WP_413285178.1	RNA polymerase sigma factor RpoS	Regulator
ACLKML_RS09760 (ACLKML_09760)	-	504142..505098 (-)	957	WP_413285179.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACLKML_RS09765 (ACLKML_09765)	-	505102..505728 (-)	627	WP_413285180.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACLKML_RS09770 (ACLKML_09770)	surE	505721..506473 (-)	753	WP_413285181.1	5'/3'-nucleotidase SurE	-
ACLKML_RS09775 (ACLKML_09775)	truD	506477..507565 (-)	1089	WP_413285182.1	tRNA pseudouridine(13) synthase TruD	-
ACLKML_RS09780 (ACLKML_09780)	ispF	507570..508046 (-)	477	WP_413285183.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACLKML_RS09785 (ACLKML_09785)	ispD	508097..508804 (-)	708	WP_413285184.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 37957.16 Da
• Isoelectric Point: 5.4134

>NTDB_id=1090685 ACLKML_RS09755 WP_413285178.1 503083..504078(-) (rpoS) [Vibrio sp. MA40-2]
MSISNAVEKVEEFETRQQSAVTSNSDLVKVTKPTQHSTKKKPQEEFEATAKTLDATQLYLGEIGFSPLLTAEEEVLYARR
ALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQT
RTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAEKLDKPVSDVNKMLRLNERVSSVDTPMGGDGEKALLDIIPDTN
HSDPEVSTQDDDIKSSLVNWLDELNSKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILLKQGL
NMESLFDVEQV

Nucleotide

• Length: 996 bp

>NTDB_id=1090685 ACLKML_RS09755 WP_413285178.1 503083..504078(-) (rpoS) [Vibrio sp. MA40-2]
ATGAGTATCAGCAATGCAGTAGAAAAAGTCGAAGAGTTTGAGACCAGACAACAGAGCGCAGTAACCTCTAATTCTGATCT
TGTTAAAGTAACTAAACCCACCCAACATTCAACCAAGAAAAAACCACAAGAAGAGTTTGAGGCAACCGCCAAAACTCTGG
ACGCAACTCAACTTTACCTTGGAGAAATTGGTTTCTCTCCATTATTAACCGCCGAAGAAGAAGTTTTATACGCCCGCAGA
GCATTACGCGGAGATGAAGCCGCTCGTAAACGTATGATCGAAAGTAACTTACGTCTTGTCGTGAAAATTTCTCGTCGTTA
CAGTAACCGCGGTCTTGCCTTACTTGACCTTATTGAAGAAGGCAATTTAGGCCTTATACGTGCAGTCGAAAAATTCGATC
CTGAGCGCGGATTTAGGTTCTCAACTTATGCTACTTGGTGGATACGCCAAACAATAGAAAGAGCATTAATGAATCAAACG
AGAACCATTCGTTTACCTATTCATGTCGTTAAAGAACTCAATATCTACTTAAGAACGGCTCGAGAGCTTTCTCAGAAGTT
GGATCATGAACCTACAGCAGAAGAGATAGCCGAAAAACTCGATAAGCCAGTCAGTGACGTAAATAAAATGTTGCGGCTAA
ATGAAAGAGTGAGCTCTGTCGATACGCCTATGGGAGGCGATGGCGAAAAAGCCTTGTTAGATATAATTCCTGATACTAAC
CATTCAGATCCCGAAGTGTCTACCCAAGATGATGATATTAAAAGTTCATTGGTTAATTGGTTGGATGAATTGAATTCTAA
GCAAAAAGAAGTACTTGCGAGACGATTCGGTTTGTTAGGCTATGAACCTTCAACGTTAGAAGAAGTCGGTCGAGAAATAA
ATCTAACTCGTGAACGGGTACGTCAAATACAGGTGGAAGGTTTACGCAGATTGCGAGAAATTCTTCTTAAGCAAGGACTG
AATATGGAGTCTTTGTTTGATGTTGAGCAAGTATAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (260-313)

• Sigma-70 region 3 (Sigma70_r3) (172-245)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (54-87)

• Sigma-70 region 2 (Sigma70_r2) (92-161)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.009	100	0.825