Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACLKML_RS07520 Genome accession   NZ_CP178628
Coordinates   24879..26330 (-) Length   483 a.a.
NCBI ID   WP_413284788.1    Uniprot ID   -
Organism   Vibrio sp. MA40-2     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 19879..31330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKML_RS07485 (ACLKML_07485) moaE 20348..20803 (-) 456 WP_413284783.1 molybdopterin synthase catalytic subunit MoaE -
  ACLKML_RS07490 (ACLKML_07490) moaD 20805..21050 (-) 246 WP_413284784.1 molybdopterin synthase sulfur carrier subunit -
  ACLKML_RS07495 (ACLKML_07495) moaC 21085..21564 (-) 480 WP_317715378.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACLKML_RS07500 (ACLKML_07500) moaB 21595..22107 (-) 513 WP_317715379.1 molybdenum cofactor biosynthesis protein B -
  ACLKML_RS07505 (ACLKML_07505) moaA 22129..23118 (-) 990 WP_413284785.1 GTP 3',8-cyclase MoaA -
  ACLKML_RS07510 (ACLKML_07510) - 23517..24404 (+) 888 WP_413284786.1 YvcK family protein -
  ACLKML_RS07515 (ACLKML_07515) - 24477..24803 (-) 327 WP_413284787.1 Hpt domain-containing protein -
  ACLKML_RS07520 (ACLKML_07520) luxO 24879..26330 (-) 1452 WP_413284788.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ACLKML_RS07525 (ACLKML_07525) uvrB 26769..28799 (-) 2031 WP_413284789.1 excinuclease ABC subunit UvrB -
  ACLKML_RS07535 (ACLKML_07535) rsxA 29726..30307 (+) 582 WP_413284790.1 electron transport complex subunit RsxA -
  ACLKML_RS07540 (ACLKML_07540) rsxB 30307..30882 (+) 576 WP_317715386.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 53451.30 Da        Isoelectric Point: 5.3893

>NTDB_id=1090682 ACLKML_RS07520 WP_413284788.1 24879..26330(-) (luxO) [Vibrio sp. MA40-2]
MNKLDLAPKTKYLLMVEDTASVAALYKSFLTPLGIDVKIVGSGKAALEMLTEGIPDLILLDLRLPDMTGMDVLHAVSRLY
PDVPIIFMTAHGSIDTAVDAMRHGAQDFLIKPCEADRLRVTVNNAIRKAEKTKSVGSEDMSSVRSQNNYQGFIGSSQMML
SVYKTIDSAATSKASIFITGESGTGKEVCAEAIHAASKRRDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAA
EMANGGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQQGRFREDLYYRLYVIPLHL
PPLRDRGEDVVEIAYSLLGHISLEEEKSFMRFTPDVIERFIGYEWPGNVRQLQNVIRNAVVLNHGKEIELSMLPPPLNQM
STEIASDNANEQSSVENLDLTVNAELTLSEGKSISTDNIVPLWLAEKQFIEQAINAFDGNIPKAANALEVSPSTIYRKRQ
AWK

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=1090682 ACLKML_RS07520 WP_413284788.1 24879..26330(-) (luxO) [Vibrio sp. MA40-2]
ATGAACAAATTAGATCTTGCTCCTAAAACAAAATATTTATTGATGGTCGAAGATACGGCTTCAGTAGCGGCTTTATACAA
GTCTTTTCTTACCCCATTAGGGATCGACGTAAAAATAGTCGGTTCAGGTAAAGCTGCCTTAGAGATGTTAACGGAGGGAA
TTCCCGATCTGATTTTATTGGATCTACGCTTGCCCGATATGACAGGTATGGATGTCTTGCATGCAGTGAGCCGTTTGTAT
CCAGATGTGCCGATTATATTTATGACCGCGCATGGATCAATTGATACTGCCGTTGATGCGATGCGACATGGCGCGCAAGA
TTTTCTGATAAAACCTTGTGAAGCCGATAGGTTAAGGGTCACAGTGAATAACGCGATTCGTAAAGCGGAAAAAACCAAAA
GCGTTGGCAGTGAAGATATGTCAAGCGTGCGTAGTCAAAACAATTATCAAGGATTTATTGGCAGTAGCCAGATGATGCTA
TCTGTTTACAAAACTATTGATTCGGCCGCAACCAGTAAAGCGAGTATCTTTATTACCGGAGAAAGTGGTACCGGAAAAGA
AGTATGCGCAGAGGCAATACACGCTGCGAGTAAGCGAAGAGACAAACCATTCATTGCGATTAATTGTGCAGCAATCCCTA
AAGACTTGATTGAAAGTGAGCTATTCGGCCATGTAAAAGGTGCGTTTACTGGTGCAGCAACAGAGCGTCAAGGAGCAGCT
GAAATGGCTAACGGTGGCACTCTATTTCTAGATGAATTATGTGAAATGGACCTAGATCTGCAAACTAAGCTGCTTCGATT
CATACAAACTGGTACGTTTCAAAAAGTAGGTTCATCAAAAATGAAAAGTGTTGATGTACGTTTTGTTTGCGCCACTAACC
GTGATCCATGGAAAGAAGTACAACAAGGCCGCTTTAGAGAAGATCTTTACTATCGTTTGTATGTCATTCCGTTGCATCTT
CCCCCACTGAGAGACAGAGGTGAAGATGTGGTCGAGATTGCTTATTCTTTATTGGGTCATATTTCGCTAGAAGAAGAAAA
ATCATTTATGCGTTTTACGCCAGATGTGATTGAACGATTTATTGGCTACGAATGGCCGGGAAATGTTCGCCAATTGCAAA
ATGTTATCAGGAATGCAGTGGTACTTAACCATGGAAAAGAAATTGAATTAAGTATGTTACCACCGCCACTTAATCAAATG
AGCACAGAAATTGCTTCTGACAACGCGAACGAACAAAGTTCAGTCGAAAATTTGGATTTAACAGTGAACGCTGAACTAAC
GTTGTCAGAGGGTAAATCTATATCAACGGATAACATCGTTCCACTGTGGTTAGCAGAAAAACAGTTTATTGAACAAGCGA
TTAACGCTTTTGATGGCAATATACCTAAAGCAGCCAATGCCTTAGAAGTGAGTCCATCTACTATTTATAGAAAACGCCAA
GCGTGGAAATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(442-482)

Sigma-54 interaction domain (Sigma54_activat)

(153-318)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

76.119

97.101

0.739

Multiple sequence alignment