Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   ACKUFW_RS17755 Genome accession   NZ_CP178610
Coordinates   3606438..3606557 (+) Length   39 a.a.
NCBI ID   WP_069473622.1    Uniprot ID   -
Organism   Bacillus velezensis strain GUMHT p116     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3601438..3611557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKUFW_RS17735 (ACKUFW_17735) - 3601788..3602300 (+) 513 Protein_3432 bacteriocin biosynthesis protein AlbG -
  ACKUFW_RS17740 (ACKUFW_17740) - 3602307..3603683 (-) 1377 WP_202735764.1 YncE family protein -
  ACKUFW_RS17745 (ACKUFW_17745) - 3603723..3605078 (-) 1356 WP_071392426.1 YncE family protein -
  ACKUFW_RS17750 (ACKUFW_17750) rapF 3605309..3606454 (+) 1146 WP_079890910.1 tetratricopeptide repeat protein Regulator
  ACKUFW_RS17755 (ACKUFW_17755) phrF 3606438..3606557 (+) 120 WP_069473622.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  ACKUFW_RS17760 (ACKUFW_17760) - 3606756..3606959 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  ACKUFW_RS17765 (ACKUFW_17765) - 3606973..3607176 (+) 204 WP_069473623.1 hypothetical protein -
  ACKUFW_RS17770 (ACKUFW_17770) - 3607211..3607396 (+) 186 Protein_3439 DUF4177 domain-containing protein -
  ACKUFW_RS17775 (ACKUFW_17775) - 3607584..3607865 (+) 282 WP_014306021.1 hypothetical protein -
  ACKUFW_RS17780 (ACKUFW_17780) - 3607909..3608421 (+) 513 WP_032859656.1 stage II sporulation protein M -
  ACKUFW_RS17785 (ACKUFW_17785) - 3609012..3609230 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  ACKUFW_RS17790 (ACKUFW_17790) speB 3609398..3610270 (-) 873 WP_007614448.1 agmatinase -
  ACKUFW_RS17795 (ACKUFW_17795) speE 3610329..3611159 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4282.10 Da        Isoelectric Point: 8.0195

>NTDB_id=1090511 ACKUFW_RS17755 WP_069473622.1 3606438..3606557(+) (phrF) [Bacillus velezensis strain GUMHT p116]
MKLKYKLALTCLAVSTVFVSADIASAPEHQFEIAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1090511 ACKUFW_RS17755 WP_069473622.1 3606438..3606557(+) (phrF) [Bacillus velezensis strain GUMHT p116]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAGTAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GGAACATCAATTTGAAATTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

70.37

69.231

0.487
  phrC Bacillus subtilis subsp. subtilis str. 168

43.59

100

0.436

Multiple sequence alignment