Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACJQW4_RS06855 Genome accession   NZ_CP178606
Coordinates   1472762..1473400 (-) Length   212 a.a.
NCBI ID   WP_241626363.1    Uniprot ID   -
Organism   Acinetobacter sp. A7.4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1467762..1478400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJQW4_RS06820 (ACJQW4_06820) mlaE 1468058..1468837 (+) 780 WP_241626375.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  ACJQW4_RS06825 (ACJQW4_06825) - 1468837..1469505 (+) 669 WP_241626373.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACJQW4_RS06830 (ACJQW4_06830) - 1469524..1470156 (+) 633 WP_241626371.1 phospholipid-binding protein MlaC -
  ACJQW4_RS06835 (ACJQW4_06835) - 1470166..1470453 (+) 288 WP_413351594.1 lipid asymmetry maintenance protein MlaB -
  ACJQW4_RS06840 (ACJQW4_06840) - 1470559..1471572 (-) 1014 WP_241626369.1 magnesium and cobalt transport protein CorA -
  ACJQW4_RS06845 (ACJQW4_06845) - 1471727..1472326 (+) 600 WP_241626367.1 TIGR00730 family Rossman fold protein -
  ACJQW4_RS06850 (ACJQW4_06850) - 1472326..1472727 (+) 402 WP_241626365.1 NUDIX hydrolase -
  ACJQW4_RS06855 (ACJQW4_06855) comF 1472762..1473400 (-) 639 WP_241626363.1 ComF family protein Machinery gene
  ACJQW4_RS06860 (ACJQW4_06860) recG 1473387..1475432 (-) 2046 WP_241626361.1 ATP-dependent DNA helicase RecG -
  ACJQW4_RS06865 (ACJQW4_06865) - 1475467..1476276 (+) 810 WP_241626360.1 NAD(P)H-binding protein -
  ACJQW4_RS06870 (ACJQW4_06870) - 1476392..1476619 (+) 228 WP_241626563.1 DUF6500 family protein -
  ACJQW4_RS06875 (ACJQW4_06875) - 1476642..1477151 (+) 510 WP_241626358.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24483.51 Da        Isoelectric Point: 9.5222

>NTDB_id=1090408 ACJQW4_RS06855 WP_241626363.1 1472762..1473400(-) (comF) [Acinetobacter sp. A7.4]
MPMFKPLLSSAQNWLHAQLPCQFCGMERGRHASLCLDCWNSLPWLKQTVQRQEIEIQVACHYAYPMDRVVQQFKYEQQLH
FQILLTGLLKQLDYRQIQAIVPMPISTQRLAERGYNQSVVLAQRLGQHLNIPVWQPIQRLHQHSQKGLSRLERLDSIEQQ
FKIAPRNALRYRRVLMLDDVVTTGSSLNALRQALAELGCRKIEAACIAAAQS

Nucleotide


Download         Length: 639 bp        

>NTDB_id=1090408 ACJQW4_RS06855 WP_241626363.1 1472762..1473400(-) (comF) [Acinetobacter sp. A7.4]
ATGCCTATGTTTAAACCACTGTTGTCTAGCGCCCAAAACTGGCTACATGCGCAACTGCCCTGTCAGTTTTGCGGGATGGA
ACGTGGGCGTCATGCCAGCTTGTGTCTGGATTGCTGGAATAGCTTACCTTGGCTGAAACAGACCGTACAGCGACAGGAAA
TCGAGATTCAAGTCGCTTGTCATTATGCCTATCCGATGGATCGGGTGGTTCAGCAATTCAAATATGAACAACAATTACAT
TTTCAAATTTTACTGACAGGGCTCCTCAAACAACTGGACTATCGGCAGATTCAAGCCATTGTCCCGATGCCGATTTCAAC
CCAACGCTTAGCCGAACGCGGTTATAACCAGAGCGTAGTGCTGGCACAGCGTTTGGGTCAGCACTTAAACATTCCTGTCT
GGCAACCGATTCAACGGCTACATCAACATTCACAAAAAGGCTTAAGCCGTTTAGAACGGCTGGATAGCATCGAGCAGCAA
TTTAAAATCGCACCGAGAAATGCATTACGTTATCGTCGTGTGTTGATGCTGGACGATGTCGTCACTACAGGCAGTTCACT
TAACGCCTTAAGACAAGCACTGGCTGAATTAGGCTGCCGCAAAATTGAAGCCGCCTGTATTGCCGCGGCTCAATCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

61.14

91.038

0.557
  comF Acinetobacter baumannii strain A118

60.622

91.038

0.552

Multiple sequence alignment