Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   ACJQW4_RS06590 Genome accession   NZ_CP178606
Coordinates   1419601..1420065 (+) Length   154 a.a.
NCBI ID   WP_241626454.1    Uniprot ID   -
Organism   Acinetobacter sp. A7.4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1414601..1425065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJQW4_RS06580 (ACJQW4_06580) - 1415370..1416137 (+) 768 WP_241626458.1 PilX N-terminal domain-containing pilus assembly protein -
  ACJQW4_RS06585 (ACJQW4_06585) - 1416156..1419590 (+) 3435 WP_241626456.1 hypothetical protein -
  ACJQW4_RS06590 (ACJQW4_06590) comE 1419601..1420065 (+) 465 WP_241626454.1 type IV pilin protein Machinery gene
  ACJQW4_RS06595 (ACJQW4_06595) - 1420059..1420535 (+) 477 WP_281070026.1 type IV pilin protein -
  ACJQW4_RS06600 (ACJQW4_06600) rpsP 1420785..1421042 (+) 258 WP_100241902.1 30S ribosomal protein S16 -
  ACJQW4_RS06605 (ACJQW4_06605) rimM 1421071..1421619 (+) 549 WP_241626452.1 ribosome maturation factor RimM -
  ACJQW4_RS06610 (ACJQW4_06610) trmD 1421662..1422405 (+) 744 WP_241626450.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACJQW4_RS06615 (ACJQW4_06615) rplS 1422584..1422958 (+) 375 WP_241626448.1 50S ribosomal protein L19 -
  ACJQW4_RS06620 (ACJQW4_06620) - 1423018..1424001 (-) 984 WP_241626446.1 lipase family alpha/beta hydrolase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16688.00 Da        Isoelectric Point: 9.3653

>NTDB_id=1090407 ACJQW4_RS06590 WP_241626454.1 1419601..1420065(+) (comE) [Acinetobacter sp. A7.4]
MNKNGFTLIELMVVLVIIAILAAIALPSYQAYSRRTKAAQAQQEIQHIAVLLERHKARNFSFKGFNINDYGINTPPTYTF
DLKDGATTTTAAKGIGSGKLLTASDASGSSWVLYVVTTDNQNYNFLMTSSGLRCKNKTETNITSAGCGVGSEPW

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1090407 ACJQW4_RS06590 WP_241626454.1 1419601..1420065(+) (comE) [Acinetobacter sp. A7.4]
ATGAATAAAAATGGTTTCACCTTAATTGAATTGATGGTGGTGCTTGTAATCATTGCGATTCTCGCTGCCATAGCGCTACC
ATCTTATCAGGCTTATTCTCGCCGTACTAAAGCGGCTCAAGCCCAACAGGAAATTCAACATATTGCAGTCCTTTTAGAGC
GGCATAAAGCAAGGAACTTCAGTTTTAAAGGGTTTAATATAAATGATTATGGGATTAATACACCCCCAACTTATACTTTT
GACTTAAAAGATGGTGCGACTACAACGACAGCCGCGAAAGGGATTGGTAGCGGAAAATTATTGACAGCTTCAGATGCTTC
CGGAAGTTCTTGGGTCCTGTATGTTGTAACGACAGATAACCAAAATTATAATTTTTTGATGACAAGTTCAGGGCTTCGTT
GCAAAAACAAGACTGAAACAAATATTACATCGGCTGGATGCGGTGTTGGGAGTGAGCCATGGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

43.429

100

0.494
  pilY2 Acinetobacter baumannii D1279779

43.671

100

0.448

Multiple sequence alignment