Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ACJQW4_RS06430 Genome accession   NZ_CP178606
Coordinates   1380759..1381502 (+) Length   247 a.a.
NCBI ID   WP_241626505.1    Uniprot ID   -
Organism   Acinetobacter sp. A7.4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1375759..1386502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJQW4_RS06415 (ACJQW4_06415) ponA 1376366..1378891 (-) 2526 WP_241626511.1 penicillin-binding protein PBP1a -
  ACJQW4_RS06420 (ACJQW4_06420) pilM 1379057..1380115 (+) 1059 WP_241626509.1 pilus assembly protein PilM Machinery gene
  ACJQW4_RS06425 (ACJQW4_06425) pilN 1380115..1380762 (+) 648 WP_241626507.1 PilN domain-containing protein Machinery gene
  ACJQW4_RS06430 (ACJQW4_06430) pilO 1380759..1381502 (+) 744 WP_241626505.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACJQW4_RS06435 (ACJQW4_06435) pilP 1381502..1382029 (+) 528 WP_241626502.1 pilus assembly protein PilP Machinery gene
  ACJQW4_RS06440 (ACJQW4_06440) pilQ 1382090..1384204 (+) 2115 WP_241626575.1 type IV pilus secretin PilQ family protein Machinery gene
  ACJQW4_RS06445 (ACJQW4_06445) aroK 1384242..1384784 (+) 543 WP_241626500.1 shikimate kinase AroK -
  ACJQW4_RS06450 (ACJQW4_06450) aroB 1384805..1385887 (+) 1083 WP_241626498.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27905.68 Da        Isoelectric Point: 5.1569

>NTDB_id=1090403 ACJQW4_RS06430 WP_241626505.1 1380759..1381502(+) (pilO) [Acinetobacter sp. A7.4]
MSRDEFDELNQEAVIKPKKKMTVDKFFQQFNTLDPNNYGSWPLSVKITCWIFIVFLICAVGYFLVIKPKLDAISSAHAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVTGVNSGLKFKNIRLEPEVKQEFFIEQP
ISMEATGDYHAFGSFVSGIAALPRIVTLHDFDITSSISKDNKSEIPQVTYVAKAKTYRYVANQNSQNMAAGTNAATAPTQ
VTPEGAK

Nucleotide


Download         Length: 744 bp        

>NTDB_id=1090403 ACJQW4_RS06430 WP_241626505.1 1380759..1381502(+) (pilO) [Acinetobacter sp. A7.4]
ATGAGTCGTGATGAATTTGATGAGCTAAATCAGGAAGCTGTCATTAAACCAAAGAAAAAAATGACAGTGGATAAGTTTTT
TCAACAATTTAATACTTTAGATCCAAATAATTATGGCAGTTGGCCATTATCAGTAAAAATTACCTGTTGGATTTTTATTG
TTTTCTTAATCTGTGCGGTGGGTTACTTTTTAGTGATTAAACCGAAATTAGATGCAATCTCCAGTGCACATGCACAAGAG
CAAAATTTACTGAATGAATTTAGAGAAAAAGATTCAAAGTTACGTAATTTACAGCAATACCAAGCTCAGTTGCAGGAGAT
GGAAGCAAACTTTAATCAACAGCTTGAACAGTTGCCTAAAGAAACCGAAATTCCTGGTTTGGTTGAAGATATTAACGTGA
CCGGTGTGAACTCTGGACTGAAGTTTAAAAACATCCGTTTAGAGCCAGAAGTTAAACAAGAGTTCTTTATTGAGCAGCCG
ATTAGTATGGAAGCGACTGGGGATTATCATGCTTTTGGTTCATTTGTAAGTGGAATAGCAGCATTACCTCGCATCGTGAC
TTTGCATGACTTTGATATCACGTCCTCAATTAGTAAGGATAATAAGTCAGAAATTCCGCAAGTGACGTACGTGGCGAAAG
CAAAAACATATCGCTATGTGGCCAATCAGAATAGTCAAAATATGGCAGCTGGTACGAATGCTGCGACTGCTCCGACACAA
GTTACTCCAGAAGGAGCGAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

71.901

97.976

0.704
  comO Acinetobacter baylyi ADP1

70.248

97.976

0.688

Multiple sequence alignment