Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilS   Type   Regulator
Locus tag   ACJQW4_RS04135 Genome accession   NZ_CP178606
Coordinates   882854..884413 (+) Length   519 a.a.
NCBI ID   WP_241628278.1    Uniprot ID   -
Organism   Acinetobacter sp. A7.4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 877854..889413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJQW4_RS04115 (ACJQW4_04115) - 878226..879530 (+) 1305 WP_241628281.1 homoserine dehydrogenase -
  ACJQW4_RS04120 (ACJQW4_04120) thrC 879588..880727 (+) 1140 WP_241628280.1 threonine synthase -
  ACJQW4_RS04125 (ACJQW4_04125) pbpG 880908..881966 (-) 1059 WP_241628279.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACJQW4_RS04130 (ACJQW4_04130) - 882183..882818 (+) 636 WP_100242578.1 response regulator -
  ACJQW4_RS04135 (ACJQW4_04135) pilS 882854..884413 (+) 1560 WP_241628278.1 sensor histidine kinase Regulator
  ACJQW4_RS04140 (ACJQW4_04140) pilR 884499..885845 (+) 1347 WP_241628334.1 sigma-54-dependent transcriptional regulator Regulator
  ACJQW4_RS04145 (ACJQW4_04145) - 885846..887012 (-) 1167 WP_241628277.1 S41 family peptidase -
  ACJQW4_RS04150 (ACJQW4_04150) gpmI 887036..888583 (-) 1548 WP_241628276.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence


Protein


Download         Length: 519 a.a.        Molecular weight: 59548.88 Da        Isoelectric Point: 6.4035

>NTDB_id=1090393 ACJQW4_RS04135 WP_241628278.1 882854..884413(+) (pilS) [Acinetobacter sp. A7.4]
MQHSQYFELNQYFFGIWYAAYRLLITSCLVLIFILTQDELASNYEYPQLYFYGLLGYFFINCVQFFNLKHFKQHIPQQFA
FIFIVDVIALSLLTFATNGPSLSISVLFLTTIFAASLLLSKQKALAITLIAIIAVIYQQFVISFLTLHSLQNLSNSVILA
VLFIVFYICGQIAVRRFQLLDHVNFSQSQELKRLQNINRYILEQIETGYLVLDENCHIVLSNPAACALLGISPFYAFDKY
PLYKLQPDLFELLNFDQVQNGEKFQFESQLSHYHLHIEVQKLIVPQQILTLLVIQDGQKINQQVQQLKLAALGQLSASIA
HEIRNPLAAIVQANELLPNSTTEQQHTLSQMINKQTQRIDKIVQDTLSMVRNKGTQPIDIQLDRFIPLFIQEDLPDLKTK
IVCHIAPQLNLSFDEAQFRQVLINLIRNAIRHNSPEHSTIELHCYTQNNNIHIDVCDFGEGVAIHDQARLFQPFFSTEIS
GTGLGLYLSHSFCEANQALLSYVEQQQGACFRIECRQLT

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=1090393 ACJQW4_RS04135 WP_241628278.1 882854..884413(+) (pilS) [Acinetobacter sp. A7.4]
ATGCAACATTCCCAATATTTCGAATTAAATCAATACTTTTTTGGGATCTGGTATGCCGCCTACCGCTTACTGATTACCAG
CTGCCTGGTCTTAATTTTTATTTTGACCCAAGATGAGCTGGCCAGCAATTATGAATATCCCCAACTGTATTTCTATGGAC
TGTTGGGTTATTTTTTCATTAACTGTGTTCAGTTCTTTAATCTCAAACATTTTAAACAGCATATTCCACAGCAATTTGCT
TTTATTTTCATTGTCGATGTCATCGCTTTAAGTTTACTGACGTTTGCCACCAATGGGCCAAGTTTAAGTATCAGCGTCTT
ATTTTTAACGACCATTTTTGCAGCTTCATTGCTTCTGAGTAAACAAAAAGCTTTAGCCATCACGCTTATTGCAATAATTG
CTGTCATTTATCAACAGTTTGTTATCAGCTTTCTGACCCTGCATTCACTCCAAAATCTCAGCAATAGCGTTATTTTGGCG
GTGCTGTTTATCGTTTTTTATATTTGCGGGCAAATTGCAGTTCGACGTTTTCAATTATTGGATCATGTCAATTTCTCACA
ATCGCAAGAACTAAAACGGCTTCAAAACATCAACCGTTATATTCTGGAGCAGATTGAAACTGGCTATCTGGTGCTGGATG
AAAATTGCCATATCGTATTAAGCAACCCCGCAGCCTGTGCGCTATTAGGCATTTCCCCTTTCTATGCCTTTGATAAGTAT
CCACTATATAAGCTACAGCCCGATTTATTTGAATTACTCAATTTTGATCAAGTCCAAAATGGGGAAAAATTTCAATTTGA
GTCGCAGCTTAGCCATTATCATTTACATATTGAAGTGCAAAAACTGATTGTCCCGCAGCAGATTCTTACGCTGCTGGTCA
TCCAAGACGGGCAAAAGATCAATCAACAGGTGCAACAATTGAAACTGGCGGCATTAGGGCAATTGTCTGCCAGTATTGCC
CATGAAATCCGCAATCCTTTAGCTGCGATTGTACAAGCCAATGAACTACTGCCCAACAGCACCACTGAACAACAACACAC
GCTGAGTCAGATGATTAATAAACAGACGCAGCGGATTGATAAAATTGTACAAGACACCTTAAGTATGGTGCGCAATAAGG
GCACCCAACCGATTGATATTCAACTGGATCGGTTTATCCCGCTATTTATTCAAGAAGATTTACCTGATCTTAAAACTAAA
ATTGTCTGTCATATTGCACCGCAGCTAAACTTGAGCTTCGATGAAGCACAATTTCGACAAGTCTTAATTAATTTAATTCG
TAATGCGATCCGACATAATTCACCTGAACACAGTACAATAGAGCTGCACTGCTATACGCAGAACAACAATATTCACATAG
ATGTGTGCGATTTTGGGGAAGGTGTGGCCATTCATGATCAAGCCCGCCTATTTCAACCGTTCTTTAGTACAGAAATTTCG
GGAACTGGTTTAGGATTATATTTATCGCATAGCTTCTGTGAGGCCAATCAGGCGCTTTTAAGCTATGTAGAACAACAACA
GGGAGCATGCTTTCGGATTGAATGCCGACAGCTGACTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

57.654

96.917

0.559


Multiple sequence alignment