Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABFT42_RS12720 Genome accession   NZ_CP178596
Coordinates   2444895..2445662 (-) Length   255 a.a.
NCBI ID   WP_010334977.1    Uniprot ID   -
Organism   Bacillus mojavensis strain C3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2439895..2450662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS12700 (ABFT42_12700) - 2440068..2440880 (-) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -
  ABFT42_RS12705 (ABFT42_12705) ccpN 2440906..2441544 (-) 639 WP_024122084.1 transcriptional regulator CcpN -
  ABFT42_RS12710 (ABFT42_12710) glyS 2441679..2443718 (-) 2040 WP_413286405.1 glycine--tRNA ligase subunit beta -
  ABFT42_RS12715 (ABFT42_12715) glyQ 2443711..2444598 (-) 888 WP_010334976.1 glycine--tRNA ligase subunit alpha -
  ABFT42_RS12720 (ABFT42_12720) recO 2444895..2445662 (-) 768 WP_010334977.1 DNA repair protein RecO Machinery gene
  ABFT42_RS12725 (ABFT42_12725) - 2445699..2445842 (-) 144 WP_024122087.1 YqzL family protein -
  ABFT42_RS12730 (ABFT42_12730) era 2445986..2446891 (-) 906 WP_010334979.1 GTPase Era -
  ABFT42_RS12735 (ABFT42_12735) - 2446872..2447282 (-) 411 WP_010334980.1 cytidine deaminase -
  ABFT42_RS12740 (ABFT42_12740) - 2447403..2447774 (-) 372 WP_229146823.1 diacylglycerol kinase family protein -
  ABFT42_RS12745 (ABFT42_12745) ybeY 2447755..2448228 (-) 474 WP_268445844.1 rRNA maturation RNase YbeY -
  ABFT42_RS12750 (ABFT42_12750) pgpH 2448229..2450364 (-) 2136 WP_413286406.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29319.99 Da        Isoelectric Point: 8.0295

>NTDB_id=1090323 ABFT42_RS12720 WP_010334977.1 2444895..2445662(-) (recO) [Bacillus mojavensis strain C3]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFEFILESFKQLDEGTDPDVITFIVQMKMLAVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFDKDPYKVPIKPQTARLLRLFYYFDLSRIGNVSLKQETKDEVKQVIDLYYEEYSGVYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1090323 ABFT42_RS12720 WP_010334977.1 2444895..2445662(-) (recO) [Bacillus mojavensis strain C3]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGTACCAATGATTACGGAGAGACGAATAAAATAGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCCAGAGGAGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TATATGGTTCATTTTTAATGCAGAAAACAACAGGCCTCGGAACCCTTCAGCAGGGTGAAATGATTCTCAGCATGAGAGGC
ATCAGAGAGGATTTGTTTTTAACTGCATATGCAGCTTTTATTGCCGAGCTCGTTGACAAAGGCACAGAAGAAAAAAAACC
AAATCCCTATTTGTTTGAATTTATTTTAGAATCCTTTAAACAGCTTGATGAAGGAACAGACCCGGATGTTATTACCTTCA
TTGTTCAAATGAAGATGCTTGCTGTGATGGGACTGTATCCTGAGCTTAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
ACATTCCATTTTTCTGTTCGCGATAACGGTTTTATTTGCCACCGCTGCTTTGACAAAGACCCTTACAAGGTGCCGATTAA
ACCGCAAACGGCAAGGCTATTGAGATTGTTTTATTACTTTGATCTTTCAAGGATTGGCAATGTGTCCTTAAAGCAGGAAA
CGAAAGATGAAGTAAAGCAAGTTATTGACTTGTACTACGAAGAATATTCAGGAGTTTATCTGAAATCGAAGCGCTTTTTA
GATCAAATGGAGAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

94.118

100

0.941

Multiple sequence alignment