Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ABFT42_RS12200 Genome accession   NZ_CP178596
Coordinates   2357142..2358872 (-) Length   576 a.a.
NCBI ID   WP_010334882.1    Uniprot ID   A0AAP3FWS8
Organism   Bacillus mojavensis strain C3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2352142..2363872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS12180 (ABFT42_12180) - 2352537..2352653 (+) 117 WP_411807337.1 hypothetical protein -
  ABFT42_RS12185 (ABFT42_12185) - 2352726..2353844 (+) 1119 WP_326217989.1 NADH-dependent flavin oxidoreductase -
  ABFT42_RS12190 (ABFT42_12190) spo0A 2354425..2355228 (-) 804 WP_010334880.1 sporulation transcription factor Spo0A Regulator
  ABFT42_RS12195 (ABFT42_12195) spoIVB 2355504..2356781 (-) 1278 WP_168748211.1 SpoIVB peptidase -
  ABFT42_RS12200 (ABFT42_12200) recN 2357142..2358872 (-) 1731 WP_010334882.1 DNA repair protein RecN Machinery gene
  ABFT42_RS12205 (ABFT42_12205) argR 2358908..2359357 (-) 450 WP_010334883.1 arginine repressor ArgR -
  ABFT42_RS12210 (ABFT42_12210) - 2359454..2360299 (-) 846 WP_413286388.1 TlyA family RNA methyltransferase -
  ABFT42_RS12215 (ABFT42_12215) dxs 2360296..2362197 (-) 1902 WP_413286389.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ABFT42_RS12220 (ABFT42_12220) - 2362376..2363266 (-) 891 WP_010334886.1 polyprenyl synthetase family protein -
  ABFT42_RS12225 (ABFT42_12225) - 2363256..2363510 (-) 255 WP_010334887.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64615.31 Da        Isoelectric Point: 4.6781

>NTDB_id=1090313 ABFT42_RS12200 WP_010334882.1 2357142..2358872(-) (recN) [Bacillus mojavensis strain C3]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFQLDSGHPVFDVC
AEQGIDVSDEMIVMRRDISTNGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIFESLQNAYNALRSE
QGGLDWVGMASSQLEDLSDINEPLQKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNFIEARLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKQELDSVGKDVAVEAANVSRIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTATRGEEAPVVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLTKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=1090313 ABFT42_RS12200 WP_010334882.1 2357142..2358872(-) (recN) [Bacillus mojavensis strain C3]
TTGTTAGCTGAATTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCACTTTTAGTCGGTGGCCGCGGCTCATCTGAAT
TTGTCAGGTATGGAGAAACAAAAGCCGAGCTTGAAGGGCTGTTTCAGTTAGACAGCGGCCATCCCGTTTTTGACGTTTGT
GCTGAACAGGGGATTGACGTTTCAGATGAAATGATCGTCATGAGAAGGGATATCAGCACGAACGGAAAAAGCGTATGCCG
GGTAAATGGCAAACTTGTAACGATTGCGTCGCTAAGAGAAATCGGTAGGCTTTTATTGGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAATCATCTTCAGCTATTGGACAAGTTTGCGGGAGCCGAAGTGGAAAGCGCACTTCAA
GCGTATCAGGAAGGTTATCAGCGCTACATGAAGCTGCTTAAAAAGTTGAAGCAGCTTTCTGAAAGTGAGCAGGAAATGGC
ACATCGGCTTGATCTGATTCAATTTCAGCTGGAAGAAATTGAGTCGGCAAAGCTCGAACTGAACGAAGATGAGCAGCTGC
AAGAAGAGCGCCAGCAAATTTCAAATTTCGAGAAAATATTTGAATCACTGCAAAATGCTTATAATGCGCTGCGCAGCGAG
CAGGGCGGTCTGGACTGGGTCGGAATGGCGTCGTCTCAGCTTGAAGATTTATCCGATATTAACGAACCGCTGCAAAAACT
GTCTGAGAGTGTTTCGAACTCCTACTATCTTTTGGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGACCCGGAACGATTGAATTTTATTGAGGCGCGTCTTAATGAGATTAAGCAGCTGAAGCGGAAATACGGGGCAACCGTT
GAGGATATTTTAGAATATGCTTCTAAAATTGAAGAAGAGATTGATCAAATTGAAAACAGAGACAGCCATCTTCAAAGCCT
GAAGCAGGAGCTGGATTCGGTTGGTAAAGATGTTGCAGTAGAAGCGGCAAACGTTTCCCGAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGACGAAATCCATCGTGAACTGAAAAGCTTATATATGGAAAAATCGACTTTCGATACGGAGTTTAAGGTC
AGAACAGCAACCCGCGGTGAGGAAGCGCCGGTTGTAAACGGGCAGCCTGTTCAGCTCACTGAACAAGGGATTGATCTGGT
GAAGTTTTTGATTTCCACCAATACGGGGGAGCCGCTGAAATCTCTTTCTAAAGTTGCTTCCGGCGGAGAGCTGTCAAGGG
TCATGCTTGCCATTAAAAGCATTTTCTCCTCACAGCAGGACGTTACCTCGATTATATTTGACGAGGTAGATACAGGCGTA
AGCGGCAGGGTCGCTCAGGCTATTGCTGAAAAGATTCACAAAGTATCAATGGGATCACAAGTGCTTTGCATTACGCACCT
GCCTCAGGTGGCAGCCATGGCCGATACCCATCTTTACATTGCGAAAGAATTAAAAGACGGAAGAACGACGACGCGTGTAA
AGCCGCTGACTAAACAAGAGAAGGTGGCGGAAATCGGGCGCATGATAGCAGGAGTCGAAGTCACAGACTTAACAAAACGC
CATGCGAAAGAGCTGTTAAAACAAGCGGATCAAGTCAAAACAACTGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

95.833

100

0.958

Multiple sequence alignment