Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ABFT42_RS12190 Genome accession   NZ_CP178596
Coordinates   2354425..2355228 (-) Length   267 a.a.
NCBI ID   WP_010334880.1    Uniprot ID   A0A9Q4HNW6
Organism   Bacillus mojavensis strain C3     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2349425..2360228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS12165 (ABFT42_12165) - 2350422..2351165 (-) 744 WP_413286387.1 glycerophosphodiester phosphodiesterase -
  ABFT42_RS12170 (ABFT42_12170) - 2351255..2351875 (-) 621 WP_326227250.1 N-acetylmuramoyl-L-alanine amidase -
  ABFT42_RS12175 (ABFT42_12175) - 2351898..2352191 (-) 294 WP_032731307.1 hypothetical protein -
  ABFT42_RS12180 (ABFT42_12180) - 2352537..2352653 (+) 117 WP_411807337.1 hypothetical protein -
  ABFT42_RS12185 (ABFT42_12185) - 2352726..2353844 (+) 1119 WP_326217989.1 NADH-dependent flavin oxidoreductase -
  ABFT42_RS12190 (ABFT42_12190) spo0A 2354425..2355228 (-) 804 WP_010334880.1 sporulation transcription factor Spo0A Regulator
  ABFT42_RS12195 (ABFT42_12195) spoIVB 2355504..2356781 (-) 1278 WP_168748211.1 SpoIVB peptidase -
  ABFT42_RS12200 (ABFT42_12200) recN 2357142..2358872 (-) 1731 WP_010334882.1 DNA repair protein RecN Machinery gene
  ABFT42_RS12205 (ABFT42_12205) argR 2358908..2359357 (-) 450 WP_010334883.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29719.20 Da        Isoelectric Point: 6.3913

>NTDB_id=1090312 ABFT42_RS12190 WP_010334880.1 2354425..2355228(-) (spo0A) [Bacillus mojavensis strain C3]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKRKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1090312 ABFT42_RS12190 WP_010334880.1 2354425..2355228(-) (spo0A) [Bacillus mojavensis strain C3]
GTGGAGAAAATTAAAGTTTGTGTTGCTGACGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTCATCGGAGTTGCTTATAACGGACAGGAATGTCTGTCGCTATTTAAAGAAAAAGATCCTGATGTGCTCG
TCTTGGACATTATTATGCCGCATTTGGACGGACTTGCTGTTTTAGAGCGCCTGAGAGAATCAGATCTGAAAAAACAGCCA
AACGTCATCATGCTGACAGCCTTCGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGAGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATTCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGCGCGC
CGTCATCACAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAAAGGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCTGCACATATTAAAGGCTATCTCTATCTGCGTGAAGCGATCTCAATGGTGTATAACGACAT
CGAACTGCTCGGCAGTATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAATACAACCGCTAGCCGTGTAGAGA
GAGCGATCCGCCACGCGATTGAAGTGGCATGGAGCAGAGGGAATATTGATTCCATATCCTCATTGTTCGGTTATACAGTC
AGCATGACGAAGGCTAAACCTACAAATTCAGAGTTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.625

100

0.996

Multiple sequence alignment