Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABFT42_RS08735 Genome accession   NZ_CP178596
Coordinates   1709705..1710604 (+) Length   299 a.a.
NCBI ID   WP_326227033.1    Uniprot ID   -
Organism   Bacillus mojavensis strain C3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1704705..1715604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS08715 (ABFT42_08715) - 1705374..1707104 (+) 1731 WP_413287262.1 hypothetical protein -
  ABFT42_RS08720 (ABFT42_08720) - 1707101..1707382 (+) 282 WP_168747814.1 FlhB-like flagellar biosynthesis protein -
  ABFT42_RS08725 (ABFT42_08725) sucC 1707556..1708713 (+) 1158 WP_010334235.1 ADP-forming succinate--CoA ligase subunit beta -
  ABFT42_RS08730 (ABFT42_08730) sucD 1708742..1709644 (+) 903 WP_010334236.1 succinate--CoA ligase subunit alpha -
  ABFT42_RS08735 (ABFT42_08735) dprA 1709705..1710604 (+) 900 WP_326227033.1 DNA-processing protein DprA Machinery gene
  ABFT42_RS08740 (ABFT42_08740) topA 1710795..1712870 (+) 2076 WP_029441257.1 type I DNA topoisomerase -
  ABFT42_RS08745 (ABFT42_08745) trmFO 1712946..1714253 (+) 1308 WP_010334239.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABFT42_RS08750 (ABFT42_08750) xerC 1714321..1715235 (+) 915 WP_286058542.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33060.19 Da        Isoelectric Point: 8.4605

>NTDB_id=1090307 ABFT42_RS08735 WP_326227033.1 1709705..1710604(+) (dprA) [Bacillus mojavensis strain C3]
MDQAAACLITCRINQLLSPSLLLKWWKADPTMSLSNSSCVLETASHGKVKTEALKNKIEEQYAKLQHLLSVYHQQGIEVI
PISSDQYPFWLKTIYDPPPVLFAKGDISLLSQGRKIGIVGTRHPTAYGIQVVNHLTIELCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEHMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYAELPERNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=1090307 ABFT42_RS08735 WP_326227033.1 1709705..1710604(+) (dprA) [Bacillus mojavensis strain C3]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAATCAATTATTATCCCCTTCTCTTCTATTAAAATGGTGGAA
AGCTGATCCGACAATGTCACTGTCAAATTCTTCATGCGTATTAGAAACCGCTTCACATGGCAAAGTAAAGACTGAGGCAT
TAAAAAATAAAATAGAAGAACAATATGCCAAACTTCAGCATTTACTCTCTGTATACCATCAGCAAGGCATTGAAGTCATC
CCAATATCCTCAGATCAATATCCATTCTGGCTGAAAACCATTTATGATCCGCCTCCCGTGCTGTTTGCAAAAGGTGATAT
ATCCCTTCTTTCTCAAGGGCGTAAAATAGGAATTGTAGGTACGCGGCATCCGACAGCCTATGGAATCCAGGTTGTCAATC
ATCTTACAATAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATTGACGGATTGTCCCATGCG
GCAAGTATTAAGGCGAAGGGGCGGACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAACACATGGCTAAACACCATCTTCTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATTATAAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGCAAAGAGAAAAGCGGTTCTTTGATT
ACCGCATACCAAGCGCTGGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TATAAAATTGATCCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGAGCTTCCTGAGAGAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

82.943

100

0.829
  dprA Legionella pneumophila strain ERS1305867

40.071

94.314

0.378

Multiple sequence alignment