Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABFT42_RS00580 Genome accession   NZ_CP178596
Coordinates   105776..107152 (+) Length   458 a.a.
NCBI ID   WP_413286829.1    Uniprot ID   -
Organism   Bacillus mojavensis strain C3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100776..112152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS00560 (ABFT42_00560) ctsR 101129..101593 (+) 465 WP_010332747.1 transcriptional regulator CtsR -
  ABFT42_RS00565 (ABFT42_00565) mcsA 101607..102164 (+) 558 WP_010332748.1 protein-arginine kinase activator protein McsA -
  ABFT42_RS00570 (ABFT42_00570) - 102164..103255 (+) 1092 WP_168746771.1 protein arginine kinase -
  ABFT42_RS00575 (ABFT42_00575) clpC 103252..105684 (+) 2433 WP_413286828.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  ABFT42_RS00580 (ABFT42_00580) radA 105776..107152 (+) 1377 WP_413286829.1 DNA repair protein RadA Machinery gene
  ABFT42_RS00585 (ABFT42_00585) disA 107156..108238 (+) 1083 WP_003242042.1 DNA integrity scanning diadenylate cyclase DisA -
  ABFT42_RS00590 (ABFT42_00590) - 108358..109458 (+) 1101 WP_168746772.1 PIN/TRAM domain-containing protein -
  ABFT42_RS00595 (ABFT42_00595) ispD 109473..110171 (+) 699 WP_413286830.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ABFT42_RS00600 (ABFT42_00600) ispF 110164..110640 (+) 477 WP_010332754.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49461.98 Da        Isoelectric Point: 8.4759

>NTDB_id=1090279 ABFT42_RS00580 WP_413286829.1 105776..107152(+) (radA) [Bacillus mojavensis strain C3]
MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSGSSRHVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYIS
SAIEEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAALMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSSGSSITASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVSEALRASLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1090279 ABFT42_RS00580 WP_413286829.1 105776..107152(+) (radA) [Bacillus mojavensis strain C3]
ATGGCTAAAACAAAATCCAAATTCATCTGCCAATCCTGCGGCTACGAGTCTCCAAAATGGATGGGGAAATGTCCGGGCTG
CGGTGCTTGGAATACAATGGTGGAAGAAATGATTAAAAAAGCACCGGCCAATCGGAGAGCGGCTTTTTCTCATTCTGTTC
AAACCGTACAGAAACCTTCCCCCATAACATCAATCGAAACATCAGAAGAACCTCGGGTGAAAACACAGCTCGGCGAGTTT
AACAGAGTGCTCGGCGGCGGAGTGGTAAAGGGATCACTTGTTTTAATTGGCGGGGACCCCGGTATCGGGAAATCGACCTT
ACTACTGCAAGTATCCGCTCAGCTATCTGGTTCATCGCGTCATGTTCTATACATTTCAGGAGAAGAATCGGTAAAACAAA
CGAAATTAAGAGCAGACCGTCTTGGCATAAATAATCCCTCACTGCATGTTTTATCCGAAACCGATATGGAGTATATTTCG
TCTGCTATAGAAGAGATGAATCCAGCGTTTGTCGTTGTCGACTCTATTCAAACGGTTTATCAAAGTGATATCACATCGGC
TCCCGGCAGTGTATCACAAGTAAGAGAATGTACAGCCGCGCTGATGAAAATTGCAAAAACAAAAGGTATTCCGATATTTA
TTGTAGGTCACGTAACGAAAGAAGGGTCCATCGCGGGACCGAGACTGCTGGAGCATATGGTTGACACTGTTTTATACTTT
GAAGGAGAACGTCACCATACTTTCCGAATCTTACGGGCTGTAAAAAACCGCTTTGGTTCTACAAACGAAATGGGTATTTT
TGAAATGCGGGAAGAAGGGCTCACTGAGGTACTGAATCCTTCAGAGATCTTCTTAGAAGAGCGTTCGGCGGGATCTTCGG
GGTCGAGCATAACGGCTTCTATGGAAGGTACAAGGCCTATTCTTGTTGAAATTCAGGCACTCATCTCGCCAACGAGCTTT
GGCAATCCGCGGCGCATGGCGACAGGGATAGATCATAACAGGGTGTCACTGTTAATGGCTGTATTAGAAAAAAGAGTAGG
GCTGCTGCTGCAAAATCAGGATGCATATTTGAAGGTAGCGGGCGGCGTCAAACTAGATGAACCTGCGATTGATCTTGCTA
TAGCGGTAAGTATCGCATCGAGCTTTAGAGATACACCTCCAAATCCTGCAGATTGCTTTATAGGAGAAGTGGGATTAACC
GGAGAAGTCCGCCGGGTATCAAGAATTGAACAGCGTGTAAAAGAAGCGGCAAAGCTTGGCTTTAAACGCATGATCATACC
TGCGGCAAATCTGGATGGATGGACGAAACCAAAAGGGATTGAGGTCATCGGAGTAGCAAATGTTTCAGAGGCACTTCGTG
CTTCATTAGGAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

97.817

100

0.978
  radA Streptococcus mitis NCTC 12261

63.576

98.908

0.629
  radA Streptococcus pneumoniae Rx1

63.576

98.908

0.629
  radA Streptococcus pneumoniae D39

63.576

98.908

0.629
  radA Streptococcus pneumoniae R6

63.576

98.908

0.629
  radA Streptococcus pneumoniae TIGR4

63.576

98.908

0.629
  radA Streptococcus mitis SK321

63.355

98.908

0.627

Multiple sequence alignment