Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACJGE3_RS11540 Genome accession   NZ_CP178562
Coordinates   2379006..2379695 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain JT-3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2374006..2384695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJGE3_RS11505 (ACJGE3_11505) - 2374204..2374686 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACJGE3_RS11510 (ACJGE3_11510) flgM 2374701..2374967 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACJGE3_RS11515 (ACJGE3_11515) - 2375037..2375456 (-) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  ACJGE3_RS11520 (ACJGE3_11520) comFC 2375530..2376219 (-) 690 WP_413354523.1 phosphoribosyltransferase family protein Machinery gene
  ACJGE3_RS11525 (ACJGE3_11525) - 2376225..2376509 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  ACJGE3_RS11530 (ACJGE3_11530) comFA 2376567..2377952 (-) 1386 WP_077722929.1 DEAD/DEAH box helicase Machinery gene
  ACJGE3_RS11535 (ACJGE3_11535) - 2378060..2378908 (-) 849 WP_003151387.1 DegV family protein -
  ACJGE3_RS11540 (ACJGE3_11540) degU 2379006..2379695 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACJGE3_RS11545 (ACJGE3_11545) degS 2379772..2380935 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACJGE3_RS11550 (ACJGE3_11550) - 2381158..2381805 (+) 648 WP_060657503.1 YigZ family protein -
  ACJGE3_RS11555 (ACJGE3_11555) - 2381810..2383024 (+) 1215 WP_156735504.1 LCP family protein -
  ACJGE3_RS11560 (ACJGE3_11560) - 2383114..2384190 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1090181 ACJGE3_RS11540 WP_003219701.1 2379006..2379695(-) (degU) [Bacillus velezensis strain JT-3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1090181 ACJGE3_RS11540 WP_003219701.1 2379006..2379695(-) (degU) [Bacillus velezensis strain JT-3]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment