Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACJGE3_RS11520 Genome accession   NZ_CP178562
Coordinates   2375530..2376219 (-) Length   229 a.a.
NCBI ID   WP_413354523.1    Uniprot ID   -
Organism   Bacillus velezensis strain JT-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2370530..2381219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJGE3_RS11485 (ACJGE3_11485) fliW 2370621..2371052 (-) 432 WP_060657507.1 flagellar assembly protein FliW -
  ACJGE3_RS11490 (ACJGE3_11490) - 2371082..2371651 (-) 570 WP_146284023.1 DUF6470 family protein -
  ACJGE3_RS11495 (ACJGE3_11495) flgL 2371742..2372659 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  ACJGE3_RS11500 (ACJGE3_11500) flgK 2372671..2374188 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  ACJGE3_RS11505 (ACJGE3_11505) - 2374204..2374686 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACJGE3_RS11510 (ACJGE3_11510) flgM 2374701..2374967 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACJGE3_RS11515 (ACJGE3_11515) - 2375037..2375456 (-) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  ACJGE3_RS11520 (ACJGE3_11520) comFC 2375530..2376219 (-) 690 WP_413354523.1 phosphoribosyltransferase family protein Machinery gene
  ACJGE3_RS11525 (ACJGE3_11525) - 2376225..2376509 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  ACJGE3_RS11530 (ACJGE3_11530) comFA 2376567..2377952 (-) 1386 WP_077722929.1 DEAD/DEAH box helicase Machinery gene
  ACJGE3_RS11535 (ACJGE3_11535) - 2378060..2378908 (-) 849 WP_003151387.1 DegV family protein -
  ACJGE3_RS11540 (ACJGE3_11540) degU 2379006..2379695 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACJGE3_RS11545 (ACJGE3_11545) degS 2379772..2380935 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25302.03 Da        Isoelectric Point: 8.4880

>NTDB_id=1090179 ACJGE3_RS11520 WP_413354523.1 2375530..2376219(-) (comFC) [Bacillus velezensis strain JT-3]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCTICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDVKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1090179 ACJGE3_RS11520 WP_413354523.1 2375530..2376219(-) (comFC) [Bacillus velezensis strain JT-3]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCACTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGTGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment