Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACJ78S_RS00045 Genome accession   NZ_CP178534
Coordinates   10474..11067 (+) Length   197 a.a.
NCBI ID   WP_010490295.1    Uniprot ID   A0AAN1C5F0
Organism   Lacticaseibacillus styriensis strain MRD1975     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5474..16067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ78S_RS00030 gyrA 6785..9409 (+) 2625 WP_087911227.1 DNA gyrase subunit A -
  ACJ78S_RS00035 ssb 9590..10021 (+) 432 WP_087911228.1 single-stranded DNA-binding protein -
  ACJ78S_RS00040 rpsF 10148..10444 (+) 297 WP_010490297.1 30S ribosomal protein S6 -
  ACJ78S_RS00045 ssb 10474..11067 (+) 594 WP_010490295.1 single-stranded DNA-binding protein Machinery gene
  ACJ78S_RS00050 rpsR 11157..11393 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  ACJ78S_RS00055 - 11473..11979 (-) 507 WP_025013654.1 type 1 glutamine amidotransferase domain-containing protein -
  ACJ78S_RS00060 - 12337..13815 (+) 1479 WP_087911229.1 cytochrome ubiquinol oxidase subunit I -
  ACJ78S_RS00065 cydB 13808..14827 (+) 1020 WP_010490252.1 cytochrome d ubiquinol oxidase subunit II -
  ACJ78S_RS00070 - 15060..15254 (+) 195 WP_010490250.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21090.81 Da        Isoelectric Point: 4.9056

>NTDB_id=1089919 ACJ78S_RS00045 WP_010490295.1 10474..11067(+) (ssb) [Lacticaseibacillus styriensis strain MRD1975]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGIEGHIQTR
SYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQQPQNPPSFGSQSAPNNAPSSNPG
QNPAAGQSQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=1089919 ACJ78S_RS00045 WP_010490295.1 10474..11067(+) (ssb) [Lacticaseibacillus styriensis strain MRD1975]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGCGGTACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGTGAACGGGAAACCGACTTTATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCAAACTTCACCAAGAAAGGCTCACTGGTCGGGATTGAAGGACACATTCAGACGCGT
TCTTACGATAATGCGCAAGGGCAGAAAGTCTATGTGACCGAAGTCGTCGTTGAGAACTTTGCATTGCTGGAATCACGGGC
AACGACACAACAACGGCCGTCCGAACCTGCGAATCCCGCTGGCCAAGGCAACCAGAATTATGGCGGTGGGCAGCAGTTTG
GTAATAACCAGCAGCCGCAAAACCCACCTAGCTTTGGTTCCCAAAGCGCCCCGAACAATGCACCATCATCGAATCCGGGC
CAAAACCCGGCGGCAGGTCAAAGCCAAGGCAACAATGGCAATGCTGCTAATCCCGATCCTTTTGCCAATAATGGTAAACC
GATCGATATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.406

100

0.604
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.492

Multiple sequence alignment