Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACL211_RS03845 Genome accession   NZ_CP178524
Coordinates   841542..841937 (+) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain X15T2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 836542..846937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL211_RS03820 - 837961..838365 (+) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -
  ACL211_RS03825 - 838514..838747 (+) 234 WP_002456242.1 DUF1146 family protein -
  ACL211_RS03830 murA 838857..840122 (+) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACL211_RS03835 fabZ 840156..840593 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACL211_RS03840 - 840911..841351 (-) 441 WP_001829935.1 YwpF-like family protein -
  ACL211_RS03845 ssb 841542..841937 (+) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  ACL211_RS03850 - 842325..842984 (+) 660 WP_001829904.1 transglycosylase family protein -
  ACL211_RS03855 tenA 843268..843957 (+) 690 WP_001829894.1 thiaminase II -
  ACL211_RS03860 thiD 843950..844771 (+) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACL211_RS03865 thiM 844764..845552 (+) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  ACL211_RS03870 thiE 845558..846196 (+) 639 WP_002505076.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=1089863 ACL211_RS03845 WP_002457121.1 841542..841937(+) (ssb) [Staphylococcus epidermidis strain X15T2]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1089863 ACL211_RS03845 WP_002457121.1 841542..841937(+) (ssb) [Staphylococcus epidermidis strain X15T2]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733

Multiple sequence alignment