Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   ACL211_RS00170 Genome accession   NZ_CP178524
Coordinates   39144..40772 (-) Length   542 a.a.
NCBI ID   WP_021758188.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain X15T2     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 29838..48075 39144..40772 within 0


Gene organization within MGE regions


Location: 29838..48075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL211_RS00120 - 29838..30638 (+) 801 WP_001831758.1 MBL fold metallo-hydrolase -
  ACL211_RS00125 rlmH 31690..32169 (+) 480 WP_001831792.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ACL211_RS00130 - 32283..33974 (+) 1692 WP_162195589.1 hypothetical protein -
  ACL211_RS00135 - 33961..34602 (+) 642 WP_162195588.1 hypothetical protein -
  ACL211_RS00140 - 34649..35464 (-) 816 WP_162195587.1 DNA-methyltransferase -
  ACL211_RS00145 - 35482..36522 (-) 1041 WP_162195586.1 DNA methyltransferase -
  ACL211_RS00150 - 36726..37216 (-) 491 Protein_27 DUF1643 domain-containing protein -
  ACL211_RS00155 - 37353..37856 (-) 504 WP_413226295.1 DUF1643 domain-containing protein -
  ACL211_RS00160 - 37871..38182 (-) 312 WP_162195584.1 DUF960 family protein -
  ACL211_RS00165 - 38269..38619 (-) 351 WP_162151871.1 SAUGI family uracil-DNA glycosylase inhibitor -
  ACL211_RS00170 ccrB 39144..40772 (-) 1629 WP_021758188.1 cassette chromosome recombinase CcrB Machinery gene
  ACL211_RS00175 ccrA 40794..42143 (-) 1350 WP_070863087.1 cassette chromosome recombinase CcrA Machinery gene
  ACL211_RS00180 cch1 42377..44164 (-) 1788 WP_232139946.1 cassette chromosome replicative helicase -
  ACL211_RS00185 ssb 44164..44454 (-) 291 WP_001656961.1 cassette chromosome ssDNA-binding protein -
  ACL211_RS00190 - 44609..45679 (+) 1071 WP_001656963.1 hypothetical protein -
  ACL211_RS00195 - 45773..47713 (+) 1941 WP_049281117.1 ATP-dependent DNA helicase -
  ACL211_RS00200 - 47893..48075 (-) 183 WP_002501913.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62714.93 Da        Isoelectric Point: 9.7970

>NTDB_id=1089856 ACL211_RS00170 WP_021758188.1 39144..40772(-) (ccrB) [Staphylococcus epidermidis strain X15T2]
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRILKDAKEGNIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYD
EVQIKINNLIKTIEDNPDLTSVIRPSIQKYEKQLNDIMNQINQFKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK
ALYLTVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=1089856 ACL211_RS00170 WP_021758188.1 39144..40772(-) (ccrB) [Staphylococcus epidermidis strain X15T2]
ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTATCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAAGTTAAAGATATATACGCTGACCGTGGTA
TTTCAGGTAAATCTATGAATCGACCTGAGCTCCAACGTATATTGAAAGATGCAAAAGAAGGCAATATCGACTGTGTTATG
GTATACAAAACAAACCGATTAGCTCGTAATACATCTGATCTTCTCAAAATTGTCGAAGATTTACACAAACAAAATGTCGA
ATTTTTCAGTTTGTCAGAGCGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAGATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAACGTATTTATGGGTCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGCAAT
TTACCACTAGGTTATGACAAAATACCAGATAGTAAACACGAGCTAATGATTAACCAACATGAAGCTAATATTGTAAAATA
TATATTCGAGTGCTATGCCAAAGGACATGGCTATCGTAAAATTGCCAATGCATTGAATCACAAAGGATATGTCACTAAAA
AGGGGAAACCTTTCAGTATTAGTTCAATCACATACATCTTAGCTAACCCTTTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTGAATGATAAACCAGTGATAGCTGAAGGTAAGCATTCCCCCATTAT
TAATCAAGATTTATGGGATAAAGTACAAATGCGTAAGAAACAAGTCAGTCAAAAACCCCAAGTCCATGGCAAAGGAACGA
ATCTGCTTACAGGCATTATTCACTGTCCCCAATGTGGCGCACCTATGGCAGCAAGCAATACCACGAATACTCTTAAAGAC
GGGACTAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGAAACAAGGGTTCCAAAGTATGTTCGGCAAACAGTGT
AAGAGCTGATGTGATTGAAGATTATGTGATGAAGCAAATACTTGAAATAGTCAAAAGTGATAAAGTCATTCAACGCGTAG
TAACACACGTCAATCAAGAAAATCAAGTTGATGGCGCTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGAT
GAAGTACAAATCAAAATAAATAACTTGATTAAAACCATCGAGGATAATCCGGACTTAACATCAGTAATCAGACCAAGTAT
TCAAAAATATGAAAAGCAACTCAATGACATTATGAATCAAATCAACCAATTCAAAAATCAACAAAATGAAGATAAGACTT
TATTTGATGCCAAAGAAATCAGTAAACTATTACAACACATCTTTCATGATATTAAGCACATAGAAAAATCTCGACTCAAA
GCATTGTATCTAACAGTGATTGATCGCATTGATATTAAAAAAGATGGTAATCATAAAAAACAATTCTATGTCACACTCAA
ACTTAATAACGAAATCATTAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCATCTCAGCACTTCGTCTTTATTTT
TGCCCCAAACACTATATCTTACTATTTAG

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

98.524

100

0.985

Multiple sequence alignment