Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ACLZ2J_RS13210 Genome accession   NZ_CP178514
Coordinates   2526567..2527637 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis strain BS18-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2521567..2532637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLZ2J_RS13165 tapA 2522046..2522807 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  ACLZ2J_RS13170 yqzG 2523079..2523405 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  ACLZ2J_RS13175 spoIITA 2523447..2523626 (-) 180 WP_003230176.1 YqzE family protein -
  ACLZ2J_RS13180 comGG 2523697..2524071 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  ACLZ2J_RS13185 comGF 2524072..2524455 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  ACLZ2J_RS13190 comGE 2524481..2524828 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  ACLZ2J_RS13195 comGD 2524812..2525243 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  ACLZ2J_RS13200 comGC 2525233..2525529 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  ACLZ2J_RS13205 comGB 2525543..2526580 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  ACLZ2J_RS13210 comGA 2526567..2527637 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  ACLZ2J_RS13215 corA 2528049..2529002 (-) 954 WP_004399136.1 magnesium transporter CorA -
  ACLZ2J_RS13220 yqhB 2529145..2530473 (+) 1329 WP_009967730.1 hemolysin family protein -
  ACLZ2J_RS13225 rsbRD 2530526..2531362 (-) 837 WP_004398754.1 RsbT co-antagonist protein RsbRD -
  ACLZ2J_RS13235 mgsR 2531586..2531966 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  ACLZ2J_RS13240 yqgY 2532198..2532443 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=1089815 ACLZ2J_RS13210 WP_004399124.1 2526567..2527637(-) (comGA) [Bacillus subtilis strain BS18-1]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1089815 ACLZ2J_RS13210 WP_004399124.1 2526567..2527637(-) (comGA) [Bacillus subtilis strain BS18-1]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGTTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACTAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment