Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ACLWNE_RS02815 | Genome accession | NZ_CP178485 |
| Coordinates | 519514..520734 (+) | Length | 406 a.a. |
| NCBI ID | WP_413217426.1 | Uniprot ID | - |
| Organism | Thermus oshimai strain Blanco | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 514514..525734
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLWNE_RS02785 (ACLWNE_02785) | holA | 514522..515418 (-) | 897 | WP_339956046.1 | DNA polymerase III subunit delta | - |
| ACLWNE_RS02790 (ACLWNE_02790) | - | 515541..516698 (-) | 1158 | WP_339956047.1 | acyl-CoA dehydrogenase family protein | - |
| ACLWNE_RS02795 (ACLWNE_02795) | - | 516742..517365 (-) | 624 | WP_339956048.1 | GNAT family N-acetyltransferase | - |
| ACLWNE_RS02800 (ACLWNE_02800) | - | 517387..518457 (+) | 1071 | WP_413217422.1 | PIG-L deacetylase family protein | - |
| ACLWNE_RS02805 (ACLWNE_02805) | scpB | 518404..518931 (-) | 528 | WP_413217424.1 | SMC-Scp complex subunit ScpB | - |
| ACLWNE_RS02810 (ACLWNE_02810) | - | 518919..519515 (-) | 597 | WP_018460679.1 | L-threonylcarbamoyladenylate synthase | - |
| ACLWNE_RS02815 (ACLWNE_02815) | pilC | 519514..520734 (+) | 1221 | WP_413217426.1 | type II secretion system F family protein | Machinery gene |
| ACLWNE_RS02820 (ACLWNE_02820) | - | 520709..521161 (-) | 453 | WP_413217427.1 | EVE domain-containing protein | - |
| ACLWNE_RS02825 (ACLWNE_02825) | - | 521232..521684 (+) | 453 | WP_413217428.1 | hypothetical protein | - |
| ACLWNE_RS02830 (ACLWNE_02830) | - | 521694..523034 (+) | 1341 | WP_413217429.1 | FAD-binding oxidoreductase | - |
| ACLWNE_RS02835 (ACLWNE_02835) | - | 523087..524024 (+) | 938 | Protein_553 | GGDEF domain-containing protein | - |
| ACLWNE_RS02840 (ACLWNE_02840) | - | 524021..525100 (-) | 1080 | WP_413217430.1 | prephenate dehydrogenase/arogenate dehydrogenase family protein | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44902.01 Da Isoelectric Point: 10.0899
>NTDB_id=1089695 ACLWNE_RS02815 WP_413217426.1 519514..520734(+) (pilC) [Thermus oshimai strain Blanco]
MPVYQYKARDRQGRLVEATIEAEDLRTAARLLRDRGLFVAEIKEPGRGLRAEVRIPALERGPGLKDLAIFSRQLATMLSA
GLTLLQSLSILERQTENKKFREIIKKVRTDVEGGSALSEALSKHKLFSRLYVNLVRAGETSGGMDVILDRLATFLEKELE
LRGKIRSAMTYPTIVFVFAVGVAYFLLTGIVPQFAQILTDLGSELPLLTRFLIALSNLLRVATLPLLLLLVVLYFVYRSY
YRTPQGRRVVDRIKLRMPVFGNLNRKTAIARFARTLALLLQSGVNILESLDITKGTAGNAIVEDLVETAKNKVQQGEPLN
LTLAQNPLVFPPMVSSMVAIGEETGALDTLLSKIADFYEREVDEAVASLTAAIEPLMIIFLGVIVGMIVAGMFLPLFKII
GTLSVQ
MPVYQYKARDRQGRLVEATIEAEDLRTAARLLRDRGLFVAEIKEPGRGLRAEVRIPALERGPGLKDLAIFSRQLATMLSA
GLTLLQSLSILERQTENKKFREIIKKVRTDVEGGSALSEALSKHKLFSRLYVNLVRAGETSGGMDVILDRLATFLEKELE
LRGKIRSAMTYPTIVFVFAVGVAYFLLTGIVPQFAQILTDLGSELPLLTRFLIALSNLLRVATLPLLLLLVVLYFVYRSY
YRTPQGRRVVDRIKLRMPVFGNLNRKTAIARFARTLALLLQSGVNILESLDITKGTAGNAIVEDLVETAKNKVQQGEPLN
LTLAQNPLVFPPMVSSMVAIGEETGALDTLLSKIADFYEREVDEAVASLTAAIEPLMIIFLGVIVGMIVAGMFLPLFKII
GTLSVQ
Nucleotide
Download Length: 1221 bp
>NTDB_id=1089695 ACLWNE_RS02815 WP_413217426.1 519514..520734(+) (pilC) [Thermus oshimai strain Blanco]
ATGCCGGTCTACCAGTATAAGGCCCGCGACCGTCAGGGCCGCTTGGTGGAGGCCACCATCGAGGCCGAGGACCTGCGCAC
CGCGGCCCGCCTCCTCCGGGACCGGGGGCTTTTCGTGGCGGAGATCAAGGAGCCGGGGCGGGGCCTCCGGGCGGAGGTGC
GGATCCCCGCCCTGGAGCGGGGGCCTGGGCTAAAAGACCTCGCCATCTTCTCCCGCCAGCTCGCCACCATGCTCTCCGCG
GGGCTCACCCTCCTCCAGTCCCTTTCCATCCTGGAGCGGCAGACGGAGAACAAGAAGTTCCGGGAGATCATCAAAAAGGT
CCGCACGGACGTGGAAGGGGGTAGCGCCCTCTCCGAGGCCCTTTCCAAGCACAAGCTCTTCTCCCGGCTTTACGTGAACC
TGGTGCGGGCGGGGGAGACCTCGGGGGGGATGGACGTCATCCTGGACCGCCTGGCCACCTTCTTGGAGAAGGAGCTGGAG
CTTCGGGGGAAGATCCGGAGCGCCATGACCTACCCCACCATCGTCTTCGTCTTCGCGGTGGGCGTGGCCTACTTCCTCCT
CACGGGGATCGTGCCCCAGTTCGCCCAGATCCTCACCGACCTGGGCTCGGAGCTCCCCCTCCTCACCCGCTTCCTCATCG
CCCTCTCTAACCTCCTCCGGGTGGCCACCCTGCCCCTCCTCCTCCTCCTGGTGGTCCTCTACTTCGTCTACCGCTCCTAC
TACCGCACCCCCCAGGGAAGGCGGGTGGTTGACCGCATCAAGCTCCGGATGCCCGTCTTCGGCAACCTGAACCGCAAGAC
GGCCATCGCCCGCTTCGCCCGCACCCTGGCCCTCCTCCTCCAGAGCGGGGTGAACATCCTGGAGTCCTTGGACATCACCA
AGGGCACCGCGGGGAACGCCATCGTGGAGGACTTGGTGGAGACCGCCAAGAACAAGGTCCAGCAGGGGGAGCCCCTGAAC
CTCACCCTGGCCCAGAACCCCCTGGTCTTCCCCCCCATGGTGAGCTCCATGGTGGCCATCGGCGAGGAGACGGGGGCTTT
GGACACCCTCCTTTCCAAGATCGCCGACTTCTACGAGCGGGAGGTGGACGAGGCGGTGGCCAGCCTCACCGCGGCCATCG
AGCCCCTCATGATCATCTTCCTGGGCGTCATCGTGGGCATGATCGTGGCGGGGATGTTCCTGCCCCTCTTCAAGATCATC
GGGACCCTCTCCGTGCAATAA
ATGCCGGTCTACCAGTATAAGGCCCGCGACCGTCAGGGCCGCTTGGTGGAGGCCACCATCGAGGCCGAGGACCTGCGCAC
CGCGGCCCGCCTCCTCCGGGACCGGGGGCTTTTCGTGGCGGAGATCAAGGAGCCGGGGCGGGGCCTCCGGGCGGAGGTGC
GGATCCCCGCCCTGGAGCGGGGGCCTGGGCTAAAAGACCTCGCCATCTTCTCCCGCCAGCTCGCCACCATGCTCTCCGCG
GGGCTCACCCTCCTCCAGTCCCTTTCCATCCTGGAGCGGCAGACGGAGAACAAGAAGTTCCGGGAGATCATCAAAAAGGT
CCGCACGGACGTGGAAGGGGGTAGCGCCCTCTCCGAGGCCCTTTCCAAGCACAAGCTCTTCTCCCGGCTTTACGTGAACC
TGGTGCGGGCGGGGGAGACCTCGGGGGGGATGGACGTCATCCTGGACCGCCTGGCCACCTTCTTGGAGAAGGAGCTGGAG
CTTCGGGGGAAGATCCGGAGCGCCATGACCTACCCCACCATCGTCTTCGTCTTCGCGGTGGGCGTGGCCTACTTCCTCCT
CACGGGGATCGTGCCCCAGTTCGCCCAGATCCTCACCGACCTGGGCTCGGAGCTCCCCCTCCTCACCCGCTTCCTCATCG
CCCTCTCTAACCTCCTCCGGGTGGCCACCCTGCCCCTCCTCCTCCTCCTGGTGGTCCTCTACTTCGTCTACCGCTCCTAC
TACCGCACCCCCCAGGGAAGGCGGGTGGTTGACCGCATCAAGCTCCGGATGCCCGTCTTCGGCAACCTGAACCGCAAGAC
GGCCATCGCCCGCTTCGCCCGCACCCTGGCCCTCCTCCTCCAGAGCGGGGTGAACATCCTGGAGTCCTTGGACATCACCA
AGGGCACCGCGGGGAACGCCATCGTGGAGGACTTGGTGGAGACCGCCAAGAACAAGGTCCAGCAGGGGGAGCCCCTGAAC
CTCACCCTGGCCCAGAACCCCCTGGTCTTCCCCCCCATGGTGAGCTCCATGGTGGCCATCGGCGAGGAGACGGGGGCTTT
GGACACCCTCCTTTCCAAGATCGCCGACTTCTACGAGCGGGAGGTGGACGAGGCGGTGGCCAGCCTCACCGCGGCCATCG
AGCCCCTCATGATCATCTTCCTGGGCGTCATCGTGGGCATGATCGTGGCGGGGATGTTCCTGCCCCTCTTCAAGATCATC
GGGACCCTCTCCGTGCAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Thermus thermophilus HB27 |
89.163 |
100 |
0.892 |