Detailed information NTG1089623

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACL001_RS16790
• Genome accession: NZ_CP178418
• Coordinates: 3514534..3515394 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152273.1
• Uniprot ID: A0A836M4G0
• Organism: Acinetobacter baumannii strain L4796hy
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3509534..3520394

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACL001_RS16770 (ACL001_16770)	secG	3510139..3510468 (-)	330	WP_096877299.1	preprotein translocase subunit SecG	-
ACL001_RS16775 (ACL001_16775)	tpiA	3510481..3511275 (-)	795	WP_000016522.1	triose-phosphate isomerase	-
ACL001_RS16780 (ACL001_16780)	pilB	3511566..3513278 (+)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACL001_RS16785 (ACL001_16785)	pilC	3513308..3514534 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
ACL001_RS16790 (ACL001_16790)	pilD	3514534..3515394 (+)	861	WP_001152273.1	prepilin peptidase	Machinery gene
ACL001_RS16795 (ACL001_16795)	coaE	3515396..3515992 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
ACL001_RS16800 (ACL001_16800)	-	3515989..3516903 (-)	915	WP_000075015.1	DMT family transporter	-
ACL001_RS16805 (ACL001_16805)	rlmB	3516939..3517688 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ACL001_RS16810 (ACL001_16810)	-	3517790..3518116 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
ACL001_RS16815 (ACL001_16815)	-	3518193..3519503 (-)	1311	WP_029574813.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32088.53 Da
• Isoelectric Point: 7.1041

>NTDB_id=1089623 ACL001_RS16790 WP_001152273.1 3514534..3515394(+) (pilD) [Acinetobacter baumannii strain L4796hy]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1089623 ACL001_RS16790 WP_001152273.1 3514534..3515394(+) (pilD) [Acinetobacter baumannii strain L4796hy]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTAGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAGGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A836M4G0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441