Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ACL000_RS01775 Genome accession   NZ_CP178412
Coordinates   382685..383425 (+) Length   246 a.a.
NCBI ID   WP_000076106.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain L4793hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377685..388425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL000_RS01760 (ACL000_01760) ponA 378272..380827 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  ACL000_RS01765 (ACL000_01765) pilM 380989..382047 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ACL000_RS01770 (ACL000_01770) pilN 382047..382688 (+) 642 WP_000201228.1 PilN domain-containing protein Machinery gene
  ACL000_RS01775 (ACL000_01775) pilO 382685..383425 (+) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACL000_RS01780 (ACL000_01780) pilP 383436..383963 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ACL000_RS01785 (ACL000_01785) pilQ 384026..386191 (+) 2166 WP_001017034.1 type IV pilus secretin PilQ Machinery gene
  ACL000_RS01790 (ACL000_01790) aroK 386203..386772 (+) 570 WP_000643712.1 shikimate kinase AroK -
  ACL000_RS01795 (ACL000_01795) aroB 386801..387883 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27805.56 Da        Isoelectric Point: 4.8357

>NTDB_id=1089542 ACL000_RS01775 WP_000076106.1 382685..383425(+) (pilO) [Acinetobacter baumannii strain L4793hy]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWVFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=1089542 ACL000_RS01775 WP_000076106.1 382685..383425(+) (pilO) [Acinetobacter baumannii strain L4793hy]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGGTTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAAAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCCCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679

Multiple sequence alignment