Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACE2AB_RS01910 Genome accession   NZ_CP178406
Coordinates   412235..413053 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain L4773hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 407235..418053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE2AB_RS01875 (ACE2AB_01875) - 407817..407947 (-) 131 Protein_361 hypothetical protein -
  ACE2AB_RS01880 (ACE2AB_01880) rpoZ 407986..408264 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACE2AB_RS01885 (ACE2AB_01885) gmk 408337..408966 (-) 630 WP_000015937.1 guanylate kinase -
  ACE2AB_RS01890 (ACE2AB_01890) ispH 409089..410039 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACE2AB_RS01895 (ACE2AB_01895) fimU 410209..410682 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACE2AB_RS01900 (ACE2AB_01900) pilV 410676..411236 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACE2AB_RS01905 (ACE2AB_01905) pilW 411237..412238 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  ACE2AB_RS01910 (ACE2AB_01910) pilX 412235..413053 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACE2AB_RS01915 (ACE2AB_01915) pilY1 413065..416919 (+) 3855 WP_000768956.1 PilC/PilY family type IV pilus protein Machinery gene
  ACE2AB_RS01920 (ACE2AB_01920) pilY2 416932..417414 (+) 483 WP_001046415.1 type IV pilin protein Machinery gene
  ACE2AB_RS01925 (ACE2AB_01925) pilE 417411..417836 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1089501 ACE2AB_RS01910 WP_000149374.1 412235..413053(+) (pilX) [Acinetobacter baumannii strain L4773hy]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1089501 ACE2AB_RS01910 WP_000149374.1 412235..413053(+) (pilX) [Acinetobacter baumannii strain L4773hy]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment