Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilV   Type   Machinery gene
Locus tag   ACE2AB_RS01900 Genome accession   NZ_CP178406
Coordinates   410676..411236 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain L4773hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 405676..416236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE2AB_RS01875 (ACE2AB_01875) - 407817..407947 (-) 131 Protein_361 hypothetical protein -
  ACE2AB_RS01880 (ACE2AB_01880) rpoZ 407986..408264 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACE2AB_RS01885 (ACE2AB_01885) gmk 408337..408966 (-) 630 WP_000015937.1 guanylate kinase -
  ACE2AB_RS01890 (ACE2AB_01890) ispH 409089..410039 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACE2AB_RS01895 (ACE2AB_01895) fimU 410209..410682 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACE2AB_RS01900 (ACE2AB_01900) pilV 410676..411236 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACE2AB_RS01905 (ACE2AB_01905) pilW 411237..412238 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  ACE2AB_RS01910 (ACE2AB_01910) pilX 412235..413053 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence


Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=1089499 ACE2AB_RS01900 WP_002194578.1 410676..411236(+) (pilV) [Acinetobacter baumannii strain L4773hy]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=1089499 ACE2AB_RS01900 WP_002194578.1 410676..411236(+) (pilV) [Acinetobacter baumannii strain L4773hy]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1

  pilV Acinetobacter baylyi ADP1

41.398

100

0.414


Multiple sequence alignment