Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACLTDJ_RS06725 Genome accession   NZ_CP178394
Coordinates   1417489..1418124 (+) Length   211 a.a.
NCBI ID   WP_095003171.1    Uniprot ID   -
Organism   Pseudomonas bubulae strain S31     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1412489..1423124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLTDJ_RS06705 (ACLTDJ_06705) - 1412821..1413753 (+) 933 WP_095003141.1 ABC transporter ATP-binding protein -
  ACLTDJ_RS06710 (ACLTDJ_06710) - 1413750..1414529 (+) 780 WP_095003142.1 ABC transporter permease -
  ACLTDJ_RS06715 (ACLTDJ_06715) - 1414575..1415090 (-) 516 WP_095003143.1 DUF2062 domain-containing protein -
  ACLTDJ_RS06720 (ACLTDJ_06720) comA 1415224..1417440 (+) 2217 WP_413052426.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACLTDJ_RS06725 (ACLTDJ_06725) exbB 1417489..1418124 (+) 636 WP_095003171.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACLTDJ_RS06730 (ACLTDJ_06730) - 1418121..1418549 (+) 429 WP_095003145.1 ExbD/TolR family protein -
  ACLTDJ_RS06735 (ACLTDJ_06735) lpxK 1418549..1419559 (+) 1011 WP_095039425.1 tetraacyldisaccharide 4'-kinase -
  ACLTDJ_RS06740 (ACLTDJ_06740) - 1419581..1419766 (+) 186 WP_086796064.1 Trm112 family protein -
  ACLTDJ_RS06745 (ACLTDJ_06745) kdsB 1419763..1420527 (+) 765 WP_413052427.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACLTDJ_RS06750 (ACLTDJ_06750) murB 1420524..1421543 (+) 1020 WP_095032537.1 UDP-N-acetylmuramate dehydrogenase -
  ACLTDJ_RS06755 (ACLTDJ_06755) - 1421559..1422170 (+) 612 WP_169917138.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22992.19 Da        Isoelectric Point: 6.8765

>NTDB_id=1089454 ACLTDJ_RS06725 WP_095003171.1 1417489..1418124(+) (exbB) [Pseudomonas bubulae strain S31]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPEHLLGQVWVWIKDKQMDKEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLNTLGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDDLVVGMEQEAIKLVEVVQGDREVDMVGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1089454 ACLTDJ_RS06725 WP_095003171.1 1417489..1418124(+) (exbB) [Pseudomonas bubulae strain S31]
GTGTGGGAACTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCTGTTGCCGCGCTGGGCATTATTGT
CGAGCGCCTGTGGACCCTGCGTGCCAGTCGCGTGACCCCGGAGCATCTGCTCGGTCAGGTCTGGGTCTGGATCAAAGACA
AGCAAATGGACAAGGAAAAACTCAAGCAATTGCGTGCCGACTCGCCTCTGGGTGAGATTCTTGCCGCGGGCCTGGCCAAC
TCCCGTCATGGTCGCGAAATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGCGTCATTCATGAGCTTGAGCGCTACCT
CAATACCCTGGGCACCATTGCCGCAATGGCGCCCTTGCTGGGGCTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGAATGACCTCCAATGCTGCGGTGCTGGCGGGTGGTATTTCCAAGGCGCTGATCACCACGGCC
GCAGGCCTGATGGTGGGTATCCCGGCCGTATTCTTCCATCGTTTCCTGCAGCGTCGTGTTGACGACCTGGTGGTTGGCAT
GGAGCAGGAGGCAATCAAGCTGGTTGAAGTGGTTCAGGGCGACCGTGAAGTCGATATGGTCGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844

Multiple sequence alignment