Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACLTDJ_RS06720 Genome accession   NZ_CP178394
Coordinates   1415224..1417440 (+) Length   738 a.a.
NCBI ID   WP_413052426.1    Uniprot ID   -
Organism   Pseudomonas bubulae strain S31     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1410224..1422440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLTDJ_RS06700 (ACLTDJ_06700) - 1412061..1412687 (+) 627 WP_095003140.1 glutathione S-transferase -
  ACLTDJ_RS06705 (ACLTDJ_06705) - 1412821..1413753 (+) 933 WP_095003141.1 ABC transporter ATP-binding protein -
  ACLTDJ_RS06710 (ACLTDJ_06710) - 1413750..1414529 (+) 780 WP_095003142.1 ABC transporter permease -
  ACLTDJ_RS06715 (ACLTDJ_06715) - 1414575..1415090 (-) 516 WP_095003143.1 DUF2062 domain-containing protein -
  ACLTDJ_RS06720 (ACLTDJ_06720) comA 1415224..1417440 (+) 2217 WP_413052426.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACLTDJ_RS06725 (ACLTDJ_06725) exbB 1417489..1418124 (+) 636 WP_095003171.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACLTDJ_RS06730 (ACLTDJ_06730) - 1418121..1418549 (+) 429 WP_095003145.1 ExbD/TolR family protein -
  ACLTDJ_RS06735 (ACLTDJ_06735) lpxK 1418549..1419559 (+) 1011 WP_095039425.1 tetraacyldisaccharide 4'-kinase -
  ACLTDJ_RS06740 (ACLTDJ_06740) - 1419581..1419766 (+) 186 WP_086796064.1 Trm112 family protein -
  ACLTDJ_RS06745 (ACLTDJ_06745) kdsB 1419763..1420527 (+) 765 WP_413052427.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACLTDJ_RS06750 (ACLTDJ_06750) murB 1420524..1421543 (+) 1020 WP_095032537.1 UDP-N-acetylmuramate dehydrogenase -
  ACLTDJ_RS06755 (ACLTDJ_06755) - 1421559..1422170 (+) 612 WP_169917138.1 hypothetical protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80065.94 Da        Isoelectric Point: 10.1312

>NTDB_id=1089453 ACLTDJ_RS06720 WP_413052426.1 1415224..1417440(+) (comA) [Pseudomonas bubulae strain S31]
MYTGMFALAAGLITLRFLPGLPSAGWLLLMATAGVLLLACRGWPVGLYVLGLCWACFQGQRALDNRLADSFDGRTLWVEG
RVIGLPQQSGTSVRFELQGAKSRHGALPATIRLSWYGGPAVNSGERWRLAVKLKKPKGLLNPQGFDFEAWLLAQRIGATG
TVKQGHLQEAASHAWRDGLRQRLLRIDAQGRASWLAALVLGDGSGLSRDDWTLLQATGTVHLLVISGQHIGLFAGLIYGF
IALLARYGLWPRRLPWLPWACALAFIGATGYGVLAGFEVPVQRACMMLGLVLAWRLWFRQLGVWLPFLLALNAVLIVEPL
ASLRAGFWLSFSAVAVLLFTFSGRLGAWGWRAMWLRPHGLIALGLFPMLWILDLPISLTGPLANLIAVPWISLAVLPTAL
LGTLLLPVPWLGENLLWLSGGLIDGLVQGLSLLADVFTPWLPVSVPIYIWLLSAAGVLILLLPAGMVLRPLGWPLVLLAL
FAPREQIPRGQVEVLQLDVGQGLAIALRTRNHTLLYDAGPKSGSLDQGERVVVPVLRSLGVAELDLMLLSHADSDHAGGA
LAVQRGVSVKRVIGGDVPGLAEPLRAQPCVSGETWEWDGVSFSLWQWAGASDSNQKSCVLQVQAGDERLLLTGDIDARAE
RALLQSPLGVPTRWLQAPHHGSKTSSSMVFLKALAPEIVLISRGHGNSFGHPHPQVMARYQALGVQVLDSAEQGAVKFRL
GVSGKAESMRDQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=1089453 ACLTDJ_RS06720 WP_413052426.1 1415224..1417440(+) (comA) [Pseudomonas bubulae strain S31]
ATGTACACAGGGATGTTTGCGCTGGCAGCGGGCCTCATCACGCTGCGGTTTTTACCTGGTTTACCGTCTGCCGGGTGGTT
GCTGCTGATGGCGACGGCGGGGGTGTTGCTATTGGCCTGCAGGGGCTGGCCGGTGGGGCTTTATGTGCTTGGGCTGTGCT
GGGCCTGCTTTCAGGGGCAAAGGGCACTGGATAACCGTCTGGCTGACTCATTCGACGGGCGTACGCTCTGGGTCGAGGGG
CGTGTGATCGGCTTGCCGCAGCAGTCTGGAACATCCGTCCGCTTTGAATTGCAGGGGGCAAAGTCGCGCCACGGTGCTTT
ACCCGCGACTATCAGGCTGAGCTGGTATGGCGGCCCTGCGGTGAACAGCGGCGAGCGCTGGCGGCTGGCGGTCAAACTCA
AGAAACCCAAAGGCTTGCTCAATCCTCAGGGGTTTGATTTTGAGGCCTGGTTACTGGCGCAGCGCATCGGTGCGACCGGT
ACGGTCAAGCAGGGGCATTTACAGGAGGCTGCCAGTCACGCCTGGCGTGACGGCTTGCGTCAGCGTCTGCTGCGCATTGA
TGCCCAGGGCCGGGCTTCGTGGTTGGCGGCGCTGGTACTGGGTGATGGATCGGGTCTGAGTCGCGATGACTGGACGTTGT
TGCAAGCGACCGGCACGGTGCATCTGCTGGTGATCTCGGGCCAGCATATTGGCCTGTTTGCCGGCTTGATCTATGGATTT
ATCGCCTTGCTGGCGCGTTATGGGCTGTGGCCACGTCGTTTGCCGTGGTTGCCCTGGGCTTGTGCCCTGGCGTTTATTGG
CGCCACGGGTTACGGCGTGCTGGCGGGCTTTGAAGTGCCGGTGCAGCGCGCGTGCATGATGCTCGGACTGGTGCTGGCAT
GGCGTTTGTGGTTTCGGCAACTGGGCGTGTGGCTGCCTTTTTTGCTGGCGCTCAATGCCGTGCTGATCGTCGAGCCGCTG
GCGAGTTTGCGGGCGGGGTTCTGGTTGTCATTCAGCGCCGTGGCGGTGCTTCTCTTTACCTTCAGTGGCCGCTTGGGGGC
GTGGGGGTGGCGGGCCATGTGGTTGCGCCCTCACGGCCTGATCGCCCTGGGCTTGTTCCCGATGCTGTGGATACTCGATC
TGCCCATCAGCCTGACCGGGCCGCTGGCCAATCTGATAGCCGTCCCCTGGATCAGCCTGGCAGTGCTGCCAACAGCTTTG
CTGGGGACCTTGCTGTTGCCTGTGCCCTGGCTGGGGGAAAACCTGCTGTGGCTGTCAGGTGGCCTGATCGATGGGTTGGT
CCAGGGCTTGAGCCTGCTGGCCGATGTGTTTACGCCGTGGTTGCCCGTATCCGTGCCGATTTACATTTGGCTGTTGAGTG
CGGCCGGAGTGCTGATCCTGTTGTTGCCTGCGGGGATGGTCTTGCGGCCGCTGGGTTGGCCGCTGGTGCTGCTGGCGCTG
TTTGCGCCCCGTGAACAGATCCCCCGCGGTCAGGTCGAGGTGCTGCAGCTGGATGTTGGTCAGGGTCTGGCGATTGCCTT
GCGTACCCGCAATCACACTCTGTTGTACGACGCAGGCCCCAAGTCAGGGAGTCTGGATCAGGGCGAGCGGGTGGTGGTGC
CGGTTTTGCGTTCATTGGGGGTGGCCGAGCTGGATTTGATGCTGCTCAGTCACGCCGATTCGGATCATGCCGGTGGGGCG
CTGGCGGTGCAGCGGGGCGTCAGCGTGAAACGGGTGATTGGCGGCGATGTGCCGGGGCTGGCGGAGCCGTTGCGGGCGCA
ACCCTGTGTCAGTGGGGAAACTTGGGAATGGGATGGGGTGAGTTTTTCACTCTGGCAGTGGGCGGGAGCCAGCGACAGTA
ATCAAAAGTCCTGCGTGTTGCAGGTGCAGGCCGGTGATGAGCGGTTGCTGCTGACCGGGGATATCGATGCCAGGGCCGAG
CGTGCCTTGCTGCAAAGCCCGCTGGGCGTGCCTACCCGCTGGTTGCAGGCTCCTCATCACGGCAGCAAGACCTCGTCGTC
GATGGTGTTTCTCAAGGCCCTGGCGCCTGAAATCGTGCTGATCTCCCGGGGGCATGGCAACAGCTTCGGTCATCCCCATC
CACAGGTGATGGCCCGGTATCAGGCGCTGGGGGTGCAGGTACTGGACAGCGCCGAGCAGGGTGCGGTGAAGTTTCGCCTG
GGGGTGTCGGGCAAGGCTGAAAGCATGCGCGACCAACGCCGGTTCTGGCGCGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-461)

Domain of unknown function (DUF4131) (DUF4131)

(19-165)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.554

97.425

0.57

Multiple sequence alignment