Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACLJJ6_RS00065 Genome accession   NZ_CP178375
Coordinates   11230..13005 (-) Length   591 a.a.
NCBI ID   WP_412989444.1    Uniprot ID   -
Organism   Pediococcus siamensis strain LMG 24279     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6230..18005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLJJ6_RS00040 (ACLJJ6_00040) - 6662..7183 (+) 522 WP_412989439.1 cyclophilin-like fold protein -
  ACLJJ6_RS00045 (ACLJJ6_00045) - 7229..7969 (+) 741 WP_412989440.1 SDR family oxidoreductase -
  ACLJJ6_RS00050 (ACLJJ6_00050) - 8019..8549 (-) 531 WP_412989441.1 TetR/AcrR family transcriptional regulator -
  ACLJJ6_RS00055 (ACLJJ6_00055) - 8691..9296 (+) 606 WP_412989442.1 GNAT family N-acetyltransferase -
  ACLJJ6_RS00060 (ACLJJ6_00060) rcrQ 9485..11233 (-) 1749 WP_412989443.1 ABC transporter ATP-binding protein Regulator
  ACLJJ6_RS00065 (ACLJJ6_00065) rcrP 11230..13005 (-) 1776 WP_412989444.1 ABC transporter ATP-binding protein Regulator
  ACLJJ6_RS00070 (ACLJJ6_00070) - 13176..13793 (+) 618 WP_412989445.1 FMN-dependent NADH-azoreductase -
  ACLJJ6_RS00075 (ACLJJ6_00075) - 13947..14549 (-) 603 WP_412989446.1 sugar O-acetyltransferase -
  ACLJJ6_RS00080 (ACLJJ6_00080) - 14592..15044 (-) 453 WP_412989447.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACLJJ6_RS00085 (ACLJJ6_00085) - 15197..16597 (+) 1401 WP_412989448.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65331.92 Da        Isoelectric Point: 9.9163

>NTDB_id=1089191 ACLJJ6_RS00065 WP_412989444.1 11230..13005(-) (rcrP) [Pediococcus siamensis strain LMG 24279]
MFKLLKRLNMHEYQMIFISVIFIALQVWLELKIPDYMSVLTQKLESSGTTTADILAPGLIMLFLSVLSVIASVIVGYFVA
KIAAGFAARLRKDSFTQIMNYASQDIKQFSVPSLLTRSTNDITQLQQFVAMGLQAIIKAPITTIWAITKIAGKGWQWTTA
TGIAVAVLTIMLTLMLLLVQPKFKVVQKLTDNLNQITRENLTGIKVVHAYNAEKYQSDKLDQANSQLTNTNLFAYRVLAL
MNPGMSLISSTLTLSVYTIGAIVINQAAQAQRLPLFGNMIVFSSYAMQVIMGFLLLSIIFVLLPRVTVSANRLNEILNVE
PSIKYPASTRNLQTSTNQKGIIEFKHVGLKYKGAESSALTNLSFKAQQGQTVAFIGSTGSGKSTALQLILRVHDATSGEI
LIDGKDIQEYSEENLNNKIGYIPQRAVLFSGTVRSNIDLGESQNKHSPLTDTEILTALDIAQAKDFVLQKEKGLDEPVAQ
HGDNFSGGQKQRLAITRAIARKPEILLFDDSFSALDYATDRKLRDNLAQKFKNVTKIIVAQRISTISDADQIIVLDNGKV
VGQGTHEQLLKNNKVYQEIAYSQLSKEELAK

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=1089191 ACLJJ6_RS00065 WP_412989444.1 11230..13005(-) (rcrP) [Pediococcus siamensis strain LMG 24279]
ATGTTCAAACTTTTAAAGCGTCTAAATATGCATGAATACCAAATGATTTTCATTAGTGTCATTTTTATTGCACTACAAGT
ATGGCTCGAATTAAAAATTCCCGATTATATGTCAGTACTGACACAGAAATTAGAATCCAGCGGAACGACGACTGCGGATA
TCCTCGCACCCGGACTAATAATGCTGTTTCTTTCGGTCCTAAGTGTAATTGCGTCTGTAATTGTTGGTTATTTTGTTGCA
AAAATTGCTGCCGGTTTTGCCGCACGTCTACGCAAGGATTCATTTACCCAAATTATGAATTACGCTAGCCAAGATATTAA
GCAGTTTTCAGTCCCAAGTTTGTTAACTCGATCAACAAATGATATTACCCAACTCCAACAATTTGTTGCCATGGGATTGC
AAGCCATAATTAAAGCACCCATTACCACCATTTGGGCAATCACTAAAATTGCCGGAAAAGGTTGGCAATGGACAACCGCC
ACCGGCATCGCTGTTGCTGTTTTAACTATCATGCTAACTTTGATGTTGCTCCTTGTTCAACCAAAGTTTAAGGTCGTTCA
AAAGCTCACCGATAACCTAAACCAGATTACACGAGAAAATCTAACTGGTATAAAAGTCGTGCATGCTTATAATGCCGAAA
AGTATCAGAGTGATAAATTGGATCAGGCAAATTCACAACTAACGAATACTAATCTATTTGCCTATCGCGTTTTAGCACTG
ATGAACCCCGGAATGTCCCTAATTTCTAGCACTTTAACCCTTTCGGTCTACACTATTGGTGCAATTGTGATTAATCAAGC
TGCCCAAGCGCAAAGACTACCGTTGTTTGGAAATATGATTGTTTTTTCATCATATGCTATGCAAGTCATTATGGGGTTTT
TATTGTTGTCCATCATCTTTGTTTTATTACCCCGCGTGACCGTTTCTGCTAACCGATTAAATGAAATCTTAAACGTCGAA
CCTTCAATTAAATATCCGGCGTCAACCCGCAATTTACAGACCTCAACTAACCAGAAAGGCATAATCGAATTTAAACACGT
TGGATTGAAATATAAAGGTGCTGAGTCAAGTGCCCTAACTAATTTAAGTTTTAAGGCCCAGCAAGGACAAACTGTAGCTT
TTATTGGTTCTACAGGTAGTGGCAAGAGTACAGCTTTGCAATTAATTTTACGTGTACATGATGCTACCTCTGGTGAAATT
CTAATTGATGGAAAAGATATTCAAGAATACAGTGAAGAAAACTTAAATAACAAAATCGGCTATATCCCGCAACGGGCCGT
ATTATTTAGCGGCACTGTCCGTTCTAATATTGACTTAGGCGAAAGCCAAAATAAACATTCGCCCCTAACAGATACGGAAA
TCCTCACTGCGTTAGATATTGCACAAGCTAAAGATTTTGTTTTACAAAAGGAAAAAGGGCTCGATGAACCCGTCGCACAA
CATGGAGATAACTTCTCTGGTGGCCAAAAACAGCGACTTGCAATTACAAGAGCAATTGCGAGAAAACCGGAGATTTTGTT
GTTTGATGATTCTTTTTCAGCTCTAGATTACGCAACGGATCGTAAGTTACGCGATAATTTAGCCCAGAAATTTAAAAATG
TCACAAAAATTATCGTGGCACAAAGAATTAGTACCATTAGTGATGCTGATCAAATCATTGTATTAGACAACGGAAAAGTA
GTTGGTCAAGGAACCCACGAACAGTTGTTGAAGAACAATAAGGTTTACCAAGAAATTGCATATTCACAGCTATCAAAGGA
GGAGCTCGCCAAATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(359-511)

ABC transporter transmembrane region (ABC_membrane)

(16-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

54.576

100

0.555

Multiple sequence alignment