Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACLJJ6_RS00060 Genome accession   NZ_CP178375
Coordinates   9485..11233 (-) Length   582 a.a.
NCBI ID   WP_412989443.1    Uniprot ID   -
Organism   Pediococcus siamensis strain LMG 24279     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4485..16233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLJJ6_RS00035 (ACLJJ6_00035) - 5646..6527 (-) 882 WP_412989438.1 LysR family transcriptional regulator -
  ACLJJ6_RS00040 (ACLJJ6_00040) - 6662..7183 (+) 522 WP_412989439.1 cyclophilin-like fold protein -
  ACLJJ6_RS00045 (ACLJJ6_00045) - 7229..7969 (+) 741 WP_412989440.1 SDR family oxidoreductase -
  ACLJJ6_RS00050 (ACLJJ6_00050) - 8019..8549 (-) 531 WP_412989441.1 TetR/AcrR family transcriptional regulator -
  ACLJJ6_RS00055 (ACLJJ6_00055) - 8691..9296 (+) 606 WP_412989442.1 GNAT family N-acetyltransferase -
  ACLJJ6_RS00060 (ACLJJ6_00060) rcrQ 9485..11233 (-) 1749 WP_412989443.1 ABC transporter ATP-binding protein Regulator
  ACLJJ6_RS00065 (ACLJJ6_00065) rcrP 11230..13005 (-) 1776 WP_412989444.1 ABC transporter ATP-binding protein Regulator
  ACLJJ6_RS00070 (ACLJJ6_00070) - 13176..13793 (+) 618 WP_412989445.1 FMN-dependent NADH-azoreductase -
  ACLJJ6_RS00075 (ACLJJ6_00075) - 13947..14549 (-) 603 WP_412989446.1 sugar O-acetyltransferase -
  ACLJJ6_RS00080 (ACLJJ6_00080) - 14592..15044 (-) 453 WP_412989447.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64905.94 Da        Isoelectric Point: 9.1874

>NTDB_id=1089190 ACLJJ6_RS00060 WP_412989443.1 9485..11233(-) (rcrQ) [Pediococcus siamensis strain LMG 24279]
MTKNNSTSLLTGIQKYGHPYIKYLILAAIFALLGSSATIIGPGQLSRITNLVAKGLVGHIDLQQVWQITILLAVLYVIGA
ILTYLQGFIVATVTQRFTQKLRTNIGLKINHLPLKYFDTHDEGDTLSRVTNDLDTLGQSLNQSLGTLISSSILLIGSIIM
MTITNVWLSLTAIFSVLAGFILTMFLMAKSQKYFNTQQNRLADISGYLEEIYTGHEVVKAYNYLKTATEKFNKINNDLYN
NVWKSQFLSGIMQPLMNFVGNFGYVAVTIVGSVLVLNNTISIGTVVAFIIYVRIFTQPLSQITQSFASLQSAQAAMKRVF
SFLNADEVSDETNKIAKIEKPKGDVVFNHVSFGYNSNQTIIKDFNVHVKPGQKVAIVGPTGSGKTTLVSLLMRFYELHQG
NIKIDGIDIQNMRREEVRNQFDMVLQDTWLFADTIKNNLKYNQKNVTDKQIEQATKAVGIDHFIHTLPEGYDTVLDDSVS
LSAGQKQLLTIARALIRNKPMLILDEATSSVDTRTEEKIQKAMDILTANRTSFIIAHRLSTIKNADLILVVKDGQIIEQG
THDKLIEANGFYSELYNSQFEA

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=1089190 ACLJJ6_RS00060 WP_412989443.1 9485..11233(-) (rcrQ) [Pediococcus siamensis strain LMG 24279]
ATGACAAAAAACAACAGCACAAGTTTATTAACTGGAATCCAAAAATATGGTCATCCTTACATTAAGTACCTCATTTTAGC
GGCTATTTTTGCCCTATTGGGAAGTTCTGCTACGATTATAGGACCAGGTCAATTAAGTCGCATTACAAACTTAGTTGCCA
AAGGATTGGTCGGCCATATTGATTTACAACAAGTATGGCAAATTACAATACTATTGGCTGTCCTGTACGTTATTGGTGCA
ATTTTGACTTATCTACAAGGATTTATTGTCGCTACAGTGACACAACGATTCACACAGAAATTGCGGACCAATATTGGTTT
AAAAATTAATCACCTGCCTCTAAAATATTTTGATACGCATGATGAAGGTGATACTTTAAGTCGGGTCACCAACGATTTAG
ACACCTTGGGACAGTCACTCAACCAAAGTTTAGGCACGCTAATTTCTTCAAGCATATTGCTGATTGGCTCGATTATTATG
ATGACCATCACAAATGTCTGGTTAAGCTTAACAGCAATTTTTTCGGTACTTGCTGGTTTTATTCTCACTATGTTTCTAAT
GGCTAAATCTCAAAAATATTTTAATACCCAGCAAAATCGGCTCGCAGATATTTCGGGCTACTTGGAAGAAATCTATACCG
GTCACGAAGTCGTTAAAGCATATAATTACTTGAAAACGGCAACTGAAAAATTTAACAAAATTAATAATGATTTATACAAC
AATGTTTGGAAATCACAATTTTTATCTGGCATTATGCAACCATTGATGAACTTTGTAGGTAATTTTGGCTACGTTGCAGT
AACCATTGTGGGTTCTGTGTTAGTCTTAAACAACACAATTAGTATTGGTACTGTAGTAGCTTTTATTATTTATGTCAGAA
TTTTTACTCAACCACTCTCACAAATCACGCAATCATTTGCCAGCTTACAATCTGCTCAGGCTGCCATGAAACGTGTTTTT
TCCTTTTTGAATGCTGACGAGGTTTCTGATGAAACTAATAAAATCGCGAAAATTGAAAAACCTAAGGGTGATGTCGTCTT
TAATCATGTTAGCTTCGGGTACAATTCCAATCAAACAATTATCAAGGATTTTAATGTCCATGTGAAACCTGGGCAGAAGG
TAGCAATCGTTGGTCCAACAGGATCAGGAAAAACAACTTTAGTGAGTTTACTAATGCGCTTTTATGAATTGCATCAAGGT
AATATTAAAATCGATGGCATTGATATACAGAACATGCGGCGTGAAGAGGTTCGTAACCAATTTGATATGGTTTTGCAAGA
TACATGGCTATTTGCTGACACAATTAAAAATAACCTTAAGTATAATCAGAAAAATGTCACAGATAAACAAATTGAACAAG
CAACTAAGGCTGTGGGTATTGATCATTTTATCCATACCCTTCCTGAGGGTTACGACACCGTCTTAGACGACTCTGTCAGT
CTCTCCGCCGGGCAAAAACAATTGCTTACCATTGCTCGCGCGCTCATTCGAAATAAACCAATGTTGATTTTAGATGAAGC
CACAAGCTCTGTAGATACCCGAACTGAAGAAAAAATTCAAAAGGCAATGGATATTTTGACTGCTAATCGTACCTCATTTA
TTATTGCCCATAGACTATCTACTATTAAAAATGCTGATTTAATTTTAGTAGTTAAAGACGGTCAAATTATTGAACAGGGT
ACGCATGACAAGCTAATTGAGGCTAATGGTTTTTATTCAGAATTATACAATAGTCAATTCGAAGCTTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(362-509)

ABC transporter transmembrane region (ABC_membrane)

(24-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.651

99.313

0.582

Multiple sequence alignment