Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACLNGX_RS08430 Genome accession   NZ_CP178374
Coordinates   1711560..1712459 (+) Length   299 a.a.
NCBI ID   WP_166706290.1    Uniprot ID   -
Organism   Bacillus velezensis strain 2023     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1706560..1717459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLNGX_RS08410 (ACLNGX_08410) - 1707251..1708954 (+) 1704 WP_166706291.1 glycosyl transferase -
  ACLNGX_RS08415 (ACLNGX_08415) - 1708951..1709232 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  ACLNGX_RS08420 (ACLNGX_08420) sucC 1709407..1710564 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  ACLNGX_RS08425 (ACLNGX_08425) sucD 1710593..1711495 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  ACLNGX_RS08430 (ACLNGX_08430) dprA 1711560..1712459 (+) 900 WP_166706290.1 DNA-processing protein DprA Machinery gene
  ACLNGX_RS08435 (ACLNGX_08435) topA 1712641..1714716 (+) 2076 WP_412838493.1 type I DNA topoisomerase -
  ACLNGX_RS08440 (ACLNGX_08440) trmFO 1714781..1716088 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACLNGX_RS08445 (ACLNGX_08445) xerC 1716158..1717075 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32868.96 Da        Isoelectric Point: 7.8285

>NTDB_id=1089146 ACLNGX_RS08430 WP_166706290.1 1711560..1712459(+) (dprA) [Bacillus velezensis strain 2023]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTASEEIFREIERKDPELDVVLSDYRRESITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=1089146 ACLNGX_RS08430 WP_166706290.1 1711560..1712459(+) (dprA) [Bacillus velezensis strain 2023]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCAGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCTCGGAAGAAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGTAGTTCTGTCCGATTACCGCCGCGAAAGCATTACTGTCATT
CCGATTTCATCAAGCCGCTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTACAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCAGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

69.9

100

0.699
  dprA Legionella pneumophila strain ERS1305867

44.082

81.94

0.361

Multiple sequence alignment