Detailed information NTG1088881

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ACLF6L_RS02510
• Genome accession: NZ_CP178333
• Coordinates: 569090..570154 (-)
• Length: 354 a.a.
• NCBI ID: WP_412852737.1
• Uniprot ID: -
• Organism: Ectothiorhodospira shaposhnikovii strain PHS-Q
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 564090..575154

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLF6L_RS02485 (ACLF6L_02485)	ccoS	566094..566291 (+)	198	WP_200173283.1	cbb3-type cytochrome oxidase assembly protein CcoS	-
ACLF6L_RS02490 (ACLF6L_02490)	-	566291..566461 (+)	171	WP_200173398.1	hypothetical protein	-
ACLF6L_RS02495 (ACLF6L_02495)	rpoH	566571..567428 (+)	858	WP_238617291.1	RNA polymerase sigma factor RpoH	-
ACLF6L_RS02500 (ACLF6L_02500)	ftsX	567453..568412 (-)	960	WP_238617292.1	permease-like cell division protein FtsX	-
ACLF6L_RS02505 (ACLF6L_02505)	ftsE	568409..569077 (-)	669	WP_238617293.1	cell division ATP-binding protein FtsE	-
ACLF6L_RS02510 (ACLF6L_02510)	pilA	569090..570154 (-)	1065	WP_412852737.1	signal recognition particle-docking protein FtsY	Machinery gene
ACLF6L_RS02515 (ACLF6L_02515)	-	570589..571953 (+)	1365	WP_412852297.1	M16 family metallopeptidase	-
ACLF6L_RS02520 (ACLF6L_02520)	-	571986..573320 (+)	1335	WP_412852298.1	M16 family metallopeptidase	-
ACLF6L_RS02525 (ACLF6L_02525)	rsmD	573320..573904 (+)	585	WP_412852299.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
ACLF6L_RS02530 (ACLF6L_02530)	-	573901..574782 (+)	882	WP_412852300.1	fructosamine kinase family protein	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37974.51 Da
• Isoelectric Point: 6.0917

>NTDB_id=1088881 ACLF6L_RS02510 WP_412852737.1 569090..570154(-) (pilA) [Ectothiorhodospira shaposhnikovii strain PHS-Q]
MPTGLPKTPDPASPGLEADKQAEAEKTGKIEKTEKIETADTGEETSKSGLFSRLRKGLSKTSSTLTEGMAGLVLGKKTID
DELLEELETRLLMADVGIEATETILEGLTRRVARKELKDAEALVKALEAAMVDVLKPVQKPLAIDAGKKPYVILVLGING
AGKTTTIGKLTHHLRRQGKSVMLAAGDTFRAAAVEQLQTWGERNQATVIAQGQGADSASVIFDAWQAAKARGMDVLIADT
AGRLHTQSNLMDELKKVKRVIQRQAPDAPHEVLLVVDAGTGQNALNQAREFHQAMDLTGIAVTKLDGTAKGGILFAIAER
VGVPVRFIGVGEKIEDLREFNAEDFARALLSDRD

Nucleotide

• Length: 1065 bp

>NTDB_id=1088881 ACLF6L_RS02510 WP_412852737.1 569090..570154(-) (pilA) [Ectothiorhodospira shaposhnikovii strain PHS-Q]
ATGCCGACCGGTCTGCCGAAAACGCCCGACCCGGCATCCCCCGGCCTGGAGGCCGACAAGCAGGCGGAAGCTGAAAAGAC
CGGGAAGATCGAGAAGACCGAGAAGATCGAAACGGCCGATACAGGCGAGGAAACCTCGAAATCGGGCCTGTTCTCCCGCC
TGCGCAAGGGGCTGTCCAAGACCTCCTCCACCCTCACCGAGGGCATGGCGGGCCTGGTCCTGGGCAAGAAGACCATCGAC
GACGAACTGCTCGAAGAGCTGGAGACCCGATTGCTCATGGCCGACGTGGGTATCGAGGCCACGGAAACCATCCTGGAAGG
CCTCACCCGGCGCGTCGCCCGCAAGGAACTCAAGGATGCCGAAGCCCTGGTCAAGGCCCTGGAAGCGGCCATGGTGGACG
TGCTCAAGCCGGTGCAGAAGCCCCTGGCGATCGATGCCGGGAAAAAGCCTTATGTGATCCTGGTACTGGGCATCAACGGT
GCCGGCAAGACCACCACCATCGGCAAGCTCACCCACCATCTGCGCCGGCAGGGCAAGTCGGTCATGCTGGCGGCCGGCGA
CACCTTCCGGGCCGCCGCGGTGGAGCAGCTGCAGACCTGGGGTGAGCGCAACCAGGCCACGGTGATCGCCCAGGGCCAGG
GCGCGGATTCGGCGTCGGTGATCTTCGATGCCTGGCAGGCCGCCAAGGCCCGAGGCATGGATGTGCTCATCGCCGATACC
GCCGGTCGTCTGCACACCCAATCCAACCTGATGGATGAATTGAAGAAGGTGAAGCGGGTGATCCAGCGCCAGGCCCCCGA
CGCCCCCCACGAGGTGCTGCTGGTGGTGGACGCGGGTACCGGCCAGAACGCCCTCAACCAGGCTCGGGAATTCCATCAGG
CCATGGATCTCACCGGTATCGCCGTCACCAAGCTGGACGGCACCGCCAAGGGCGGCATCCTGTTCGCCATCGCCGAACGG
GTGGGTGTGCCGGTGCGTTTCATCGGCGTGGGGGAAAAGATCGAGGATCTGCGGGAGTTCAACGCCGAAGACTTTGCCAG
GGCCTTGCTGTCGGATCGGGACTAG

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (65-130)

• SRP54-type protein, GTPase domain (SRP54) (151-350)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.468	97.74	0.523