Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   ACFCT9_RS05260 Genome accession   NZ_CP178241
Coordinates   1044511..1045554 (-) Length   347 a.a.
NCBI ID   WP_412521381.1    Uniprot ID   -
Organism   Staphylococcus simulans strain PFJB-50N     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1039511..1050554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFCT9_RS05230 - 1040633..1040839 (-) 207 WP_412521376.1 DUF1128 family protein -
  ACFCT9_RS05235 - 1041064..1041528 (+) 465 WP_412521377.1 low molecular weight protein-tyrosine-phosphatase -
  ACFCT9_RS05240 - 1041536..1041826 (+) 291 WP_412521378.1 YtxH domain-containing protein -
  ACFCT9_RS05245 - 1041955..1043034 (+) 1080 WP_412521379.1 YihY/virulence factor BrkB family protein -
  ACFCT9_RS05250 - 1043242..1043820 (+) 579 WP_412521380.1 beta-class carbonic anhydrase -
  ACFCT9_RS05255 vraR 1043892..1044521 (-) 630 WP_002481662.1 response regulator transcription factor Regulator
  ACFCT9_RS05260 vraS 1044511..1045554 (-) 1044 WP_412521381.1 sensor histidine kinase Regulator
  ACFCT9_RS05265 liaF 1045551..1046252 (-) 702 WP_412521382.1 cell wall-active antibiotics response protein LiaF -
  ACFCT9_RS05270 - 1046268..1046663 (-) 396 WP_412521383.1 hypothetical protein -
  ACFCT9_RS05275 map 1046779..1047543 (-) 765 WP_412521384.1 type I methionyl aminopeptidase -
  ACFCT9_RS05280 - 1047764..1048750 (+) 987 WP_412521385.1 FUSC family protein -
  ACFCT9_RS05285 - 1048830..1049549 (-) 720 WP_412521386.1 type 1 glutamine amidotransferase -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 39913.19 Da        Isoelectric Point: 4.9759

>NTDB_id=1088620 ACFCT9_RS05260 WP_412521381.1 1044511..1045554(-) (vraS) [Staphylococcus simulans strain PFJB-50N]
MNHYIRAIGSMLILNYSILAVFFFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNIIVILMSIIVGSVLAYKVNEQNDWIKT
QIEHSIEGEVVGINDQNIELYQETLDIYHTLVPLNQELHRLRIKTQDLTNETYNLNDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKESPLEPPLDQQIPTLEKMVQDSQLEMRALLLHLRPLGLKDRSLGEGIKDLVVDLQKKVPMKVVYEI
EDFEVPKGIEDHLFRITQEGISNTLRHAEGTKLTIDLYNKDDYLLLRIQDDGKGFDVDEKMEKSYGLKNMRERALEIGAT
LHIVSLPGAGTRIEVKAPLNKEDKDGD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1088620 ACFCT9_RS05260 WP_412521381.1 1044511..1045554(-) (vraS) [Staphylococcus simulans strain PFJB-50N]
ATGAACCACTATATCAGAGCCATCGGTTCAATGCTGATATTGAACTATAGTATTTTAGCGGTTTTCTTTTTTATAGACAA
AGTATTTGTTAATATTATCTATTTCCAGGGAATGTTTTACACGCAAATTTTCGGCATTCCTGTTTTCTTGTTTTTAAATA
TTATAGTCATTTTGATGAGTATTATTGTCGGTTCTGTGTTAGCTTATAAAGTGAACGAACAAAATGATTGGATTAAGACA
CAAATTGAACATTCCATTGAAGGTGAAGTTGTCGGTATTAATGACCAAAACATCGAACTTTATCAAGAAACATTGGATAT
TTATCATACACTCGTTCCTTTAAACCAAGAATTACATCGTTTACGTATTAAGACACAAGATTTGACCAATGAAACTTATA
ATTTAAATGATGTTAAAGTTAAGAAAATAATTGAAGATGAACGCCAACGTTTAGCAAGGGAACTGCATGACTCAGTCAGC
CAACAATTATTTGCGGCCAGTATGATGTTATCGGCGATTAAGGAATCACCCCTCGAACCGCCGCTTGATCAGCAGATTCC
GACACTAGAAAAAATGGTTCAAGATTCACAATTAGAAATGCGTGCACTCTTACTGCATTTAAGACCACTTGGGTTAAAAG
ACCGTTCATTAGGTGAAGGGATTAAAGACCTTGTTGTGGATTTACAAAAGAAAGTGCCGATGAAAGTGGTATATGAAATT
GAGGATTTTGAAGTGCCAAAAGGGATTGAGGATCATTTATTCCGTATTACGCAAGAAGGTATTTCAAATACTTTGCGACA
TGCAGAAGGCACAAAATTAACTATTGATTTATATAATAAAGATGATTATCTGTTATTGCGTATTCAAGATGATGGTAAAG
GCTTTGATGTAGATGAAAAAATGGAGAAAAGCTATGGATTGAAGAATATGCGAGAGCGAGCATTAGAAATTGGAGCAACA
CTGCATATTGTATCTTTGCCAGGTGCAGGGACAAGAATAGAAGTGAAGGCTCCATTGAATAAGGAGGATAAAGATGGCGA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

86.455

100

0.865


Multiple sequence alignment