Detailed information
Bioinformatically predicted
Overview
| Name | comGD | Type | Machinery gene |
| Locus tag | ACLFAM_RS05285 | Genome accession | NZ_CP178226 |
| Coordinates | 1045286..1045645 (-) | Length | 119 a.a. |
| NCBI ID | WP_023188582.1 | Uniprot ID | - |
| Organism | Lactococcus lactis strain L-WY410 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1040286..1050645
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLFAM_RS05250 (ACLFAM_05250) | - | 1040530..1041396 (+) | 867 | WP_039116457.1 | RluA family pseudouridine synthase | - |
| ACLFAM_RS05255 (ACLFAM_05255) | - | 1041435..1042244 (-) | 810 | WP_014570791.1 | metal ABC transporter permease | - |
| ACLFAM_RS05260 (ACLFAM_05260) | - | 1042237..1042974 (-) | 738 | WP_012898617.1 | metal ABC transporter ATP-binding protein | - |
| ACLFAM_RS05265 (ACLFAM_05265) | - | 1043151..1043993 (-) | 843 | WP_015427160.1 | metal ABC transporter substrate-binding protein | - |
| ACLFAM_RS05270 (ACLFAM_05270) | - | 1043990..1044427 (-) | 438 | WP_010906313.1 | zinc-dependent MarR family transcriptional regulator | - |
| ACLFAM_RS05275 (ACLFAM_05275) | comGG | 1044509..1044793 (-) | 285 | WP_025017139.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| ACLFAM_RS05280 (ACLFAM_05280) | comGF | 1044832..1045314 (-) | 483 | WP_039116460.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| ACLFAM_RS05285 (ACLFAM_05285) | comGD | 1045286..1045645 (-) | 360 | WP_023188582.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| ACLFAM_RS05290 (ACLFAM_05290) | comGC | 1045677..1045946 (-) | 270 | WP_023188581.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACLFAM_RS05295 (ACLFAM_05295) | comGB | 1046073..1047146 (-) | 1074 | WP_080756637.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACLFAM_RS05300 (ACLFAM_05300) | comGA | 1047040..1047977 (-) | 938 | Protein_1038 | competence type IV pilus ATPase ComGA | - |
Sequence
Protein
Download Length: 119 a.a. Molecular weight: 13717.95 Da Isoelectric Point: 7.9853
>NTDB_id=1088556 ACLFAM_RS05285 WP_023188582.1 1045286..1045645(-) (comGD) [Lactococcus lactis strain L-WY410]
MLIISFITTLFSSEIIQTVHLFKGELFVLQFENFYKRSQEEAALLQKSESLVAKNQELICEDRSITIPKEVAVKDFTVKF
DDKGENSSLQKLTISLPYEKKFITYQLEIGSGKFKKKIS
MLIISFITTLFSSEIIQTVHLFKGELFVLQFENFYKRSQEEAALLQKSESLVAKNQELICEDRSITIPKEVAVKDFTVKF
DDKGENSSLQKLTISLPYEKKFITYQLEIGSGKFKKKIS
Nucleotide
Download Length: 360 bp
>NTDB_id=1088556 ACLFAM_RS05285 WP_023188582.1 1045286..1045645(-) (comGD) [Lactococcus lactis strain L-WY410]
TTGTTGATTATTTCTTTTATCACAACTCTTTTTTCTTCAGAAATAATACAAACAGTCCATCTTTTTAAGGGAGAATTGTT
TGTTCTTCAATTTGAAAATTTCTATAAAAGGAGTCAAGAAGAGGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTA
AAAATCAAGAATTAATCTGTGAAGATAGAAGTATCACAATTCCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTT
GATGATAAGGGAGAGAATTCTAGCTTACAAAAACTCACAATTTCTTTACCTTACGAAAAAAAGTTCATCACTTATCAATT
GGAGATAGGCAGTGGAAAATTTAAAAAGAAAATCAGTTAA
TTGTTGATTATTTCTTTTATCACAACTCTTTTTTCTTCAGAAATAATACAAACAGTCCATCTTTTTAAGGGAGAATTGTT
TGTTCTTCAATTTGAAAATTTCTATAAAAGGAGTCAAGAAGAGGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTA
AAAATCAAGAATTAATCTGTGAAGATAGAAGTATCACAATTCCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTT
GATGATAAGGGAGAGAATTCTAGCTTACAAAAACTCACAATTTCTTTACCTTACGAAAAAAAGTTCATCACTTATCAATT
GGAGATAGGCAGTGGAAAATTTAAAAAGAAAATCAGTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGD | Lactococcus lactis subsp. cremoris KW2 |
65.812 |
98.319 |
0.647 |
| comYD | Streptococcus mutans UA140 |
36.752 |
98.319 |
0.361 |
| comYD | Streptococcus mutans UA159 |
36.752 |
98.319 |
0.361 |