Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACLII2_RS20200 Genome accession   NZ_CP178213
Coordinates   3844823..3845272 (+) Length   149 a.a.
NCBI ID   WP_003246436.1    Uniprot ID   A0AAE2SFQ0
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3839823..3850272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS20180 hxlR 3841033..3841395 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  ACLII2_RS20185 hxlA 3841628..3842260 (+) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  ACLII2_RS20190 hxlB 3842266..3842823 (+) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  ACLII2_RS20195 tlpC 3842934..3844655 (+) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  ACLII2_RS20200 nucA/comI 3844823..3845272 (+) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  ACLII2_RS20205 nin/comJ 3845299..3845697 (+) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  ACLII2_RS20210 bglC 3845734..3847167 (-) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  ACLII2_RS20215 yckD 3847321..3847653 (-) 333 WP_003246247.1 YckD family protein -
  ACLII2_RS20220 yckC 3847735..3848190 (-) 456 WP_003246356.1 RDD family protein -
  ACLII2_RS20225 - 3848209..3848406 (-) 198 WP_119122841.1 hypothetical protein -
  ACLII2_RS20230 yckB 3848568..3849431 (+) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  ACLII2_RS20235 yckA 3849441..3850121 (+) 681 WP_003234624.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.48 Da        Isoelectric Point: 4.6274

>NTDB_id=1088340 ACLII2_RS20200 WP_003246436.1 3844823..3845272(+) (nucA/comI) [Bacillus subtilis subsp. subtilis strain BM107]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1088340 ACLII2_RS20200 WP_003246436.1 3844823..3845272(+) (nucA/comI) [Bacillus subtilis subsp. subtilis strain BM107]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATGGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
GGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment