Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   ACLII2_RS15940 Genome accession   NZ_CP178213
Coordinates   3009844..3010797 (-) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3004844..3015797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS15910 appD 3004963..3005949 (-) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -
  ACLII2_RS15915 yjaZ 3006141..3006926 (-) 786 WP_003232967.1 DUF2268 domain-containing protein -
  ACLII2_RS15920 fabF 3007002..3008243 (-) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  ACLII2_RS15925 fabH 3008266..3009204 (-) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  ACLII2_RS15930 yjzB 3009369..3009608 (+) 240 WP_003232972.1 spore coat protein YjzB -
  ACLII2_RS15935 comZ 3009638..3009829 (-) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  ACLII2_RS15940 med 3009844..3010797 (-) 954 WP_003245494.1 transcriptional regulator Med Regulator
  ACLII2_RS15945 - 3010888..3011445 (-) 558 WP_003232974.1 hypothetical protein -
  ACLII2_RS15950 - 3011527..3012261 (-) 735 WP_003245223.1 hypothetical protein -
  ACLII2_RS15955 yjzD 3012510..3012695 (+) 186 WP_003245236.1 YjzD family protein -
  ACLII2_RS15960 yjzC 3012741..3012920 (-) 180 WP_003245356.1 YjzC family protein -
  ACLII2_RS15965 argF 3013006..3013965 (-) 960 WP_003232980.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=1088322 ACLII2_RS15940 WP_003245494.1 3009844..3010797(-) (med) [Bacillus subtilis subsp. subtilis strain BM107]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1088322 ACLII2_RS15940 WP_003245494.1 3009844..3010797(-) (med) [Bacillus subtilis subsp. subtilis strain BM107]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment